View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21589_low_4 (Length: 424)
Name: NF21589_low_4
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 34835210 - 34834810
Alignment:
| Q |
8 |
tgagaagaaagataaaatttgtggagtgattttggatgatggttctatttgtacaaagacaccggtcgagaaaagagttaggtgtcatgaacataaagga |
107 |
Q |
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| T |
34835210 |
tgagaagaaagataaaatttgtggagtgattttggatgatggttctatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaagga |
34835111 |
T |
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| Q |
108 |
atgagaataagaacagcaaaatcagaatcaaaaagaggaaatgcttgtaggtaccaaaatattaaacatgatgttgaagatcttccacaaacagtggttg |
207 |
Q |
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| T |
34835110 |
atgagaataagaacagcaaaatcagaatcaaaaagaggaaatgcttgtaggtaccaaaatattaaacatgatgttgaagatcttccacaaacagtggttg |
34835011 |
T |
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| Q |
208 |
agagtcttgttgatgagagtatcaccaaaactattacatgtggaattattttggaagatggaaccacttgtagaagacaaccagttaaaggaagaaaaag |
307 |
Q |
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| T |
34835010 |
agagtcttgttgatgagagtatcaccaaaactattacatgtggaattattttggaagatggaaccacttgtagaagacaaccagttaaaggaagaaaaag |
34834911 |
T |
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| Q |
308 |
atgtcatgatcataaagggaagagaattcgtgcatttgttcctattaattagaaataattgatgatgaataatggacaatttttgcctagaccacaaatg |
407 |
Q |
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| T |
34834910 |
atgtcatgatcataaagggaagagaattcgtgcatttgttcctattaattagaaataattgatgatgaataatggacaatttttgcctagaccacaaatg |
34834811 |
T |
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| Q |
408 |
t |
408 |
Q |
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| T |
34834810 |
t |
34834810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 34820119 - 34820049
Alignment:
| Q |
43 |
atgatggttctatttgtacaaagacaccggtcgagaaaagagttaggtgtcatgaacataaaggaatgaga |
113 |
Q |
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| T |
34820119 |
atgatggtagtatttgtacaaagccaccagctgagaaaagagttagctgccaagaacataaaggaatgaga |
34820049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 35336803 - 35336997
Alignment:
| Q |
147 |
aatgcttgtaggtaccaaaatattaaacatgatgttgaagatcttccacaaacagtggttgagagtcttgttgatgagagtatcaccaaaactattacat |
246 |
Q |
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| T |
35336803 |
aatgcttataggtaccaaaatgccagccatgatgtagaagaccctcctcaaagaacggttaagtgtcatgttgaggagggtatcaccaaaaccattatct |
35336902 |
T |
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| Q |
247 |
gtggaattattttggaagatggaaccacttgtagaagacaaccagttaaaggaagaaaaagatgtcatgatcataaagggaagagaattcgtgca |
341 |
Q |
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| T |
35336903 |
gtggaatcatcttggatgatggatctacttgtagaagacaaccggttaaaggaagaaaaaggtgccaggaacataaagggaggagaattcgtgca |
35336997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 35336646 - 35336743
Alignment:
| Q |
20 |
taaaatttgtggagtgattttggatgatggttctatttgtacaaagacaccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
117 |
Q |
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||||||||| |||||||| ||| || ||||||||||||| || | ||||||| || |||||||| ||||||| |||||| |||||||||||||||| |
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| T |
35336646 |
taaaatttgcggagtgatgttgaccgacggttctatttgtaaaaggccaccggttgaaaaaagagtgaggtgtcctgaacacaaaggaatgagaataa |
35336743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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