View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_high_10 (Length: 676)

Name: NF2158_high_10
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_high_10
NF2158_high_10
[»] chr5 (26 HSPs)
chr5 (107-652)||(38029478-38030023)
chr5 (9-152)||(38029262-38029414)
chr5 (192-303)||(3907661-3907770)
chr5 (143-305)||(42419988-42420153)
chr5 (194-302)||(22399776-22399884)
chr5 (194-305)||(25545223-25545332)
chr5 (194-298)||(27195262-27195366)
chr5 (146-229)||(3907630-3907714)
chr5 (159-274)||(36059241-36059359)
chr5 (192-299)||(31273046-31273153)
chr5 (194-305)||(41169415-41169526)
chr5 (145-219)||(17474862-17474939)
chr5 (194-305)||(4190084-4190197)
chr5 (148-229)||(22399746-22399830)
chr5 (194-250)||(3771224-3771280)
chr5 (192-299)||(7721346-7721453)
chr5 (163-229)||(25545211-25545278)
chr5 (145-247)||(32309658-32309763)
chr5 (202-305)||(36005022-36005125)
chr5 (198-248)||(41106466-41106516)
chr5 (194-235)||(35244865-35244906)
chr5 (206-318)||(40530010-40530120)
chr5 (145-250)||(19332019-19332125)
chr5 (159-227)||(40927687-40927758)
chr5 (165-216)||(28907361-28907415)
chr5 (165-216)||(28943756-28943810)
[»] chr2 (42 HSPs)
chr2 (148-319)||(42094196-42094365)
chr2 (144-305)||(25666801-25666965)
chr2 (192-299)||(1469748-1469855)
chr2 (172-305)||(42029342-42029478)
chr2 (194-301)||(37810153-37810260)
chr2 (147-276)||(3466419-3466551)
chr2 (192-305)||(33069170-33069283)
chr2 (194-323)||(42251188-42251319)
chr2 (146-319)||(18719707-18719882)
chr2 (192-305)||(41496062-41496175)
chr2 (172-303)||(16209375-16209509)
chr2 (192-319)||(4237239-4237366)
chr2 (172-286)||(2683398-2683515)
chr2 (175-305)||(45300370-45300503)
chr2 (194-295)||(44247563-44247664)
chr2 (194-319)||(33171624-33171751)
chr2 (194-305)||(9430162-9430273)
chr2 (153-299)||(40358631-40358780)
chr2 (205-303)||(15194540-15194638)
chr2 (151-305)||(45300346-45300503)
chr2 (171-301)||(1930669-1930801)
chr2 (151-216)||(9430229-9430297)
chr2 (150-229)||(12779480-12779561)
chr2 (160-229)||(42029421-42029493)
chr2 (159-229)||(6979076-6979148)
chr2 (174-229)||(33171678-33171736)
chr2 (159-249)||(12703459-12703552)
chr2 (159-229)||(15194522-15194595)
chr2 (208-305)||(29160844-29160941)
chr2 (192-233)||(30841032-30841073)
chr2 (141-228)||(35715053-35715143)
chr2 (165-315)||(37810139-37810292)
chr2 (215-294)||(17383774-17383853)
chr2 (172-250)||(36283540-36283619)
chr2 (194-305)||(44487178-44487288)
chr2 (172-229)||(42251242-42251302)
chr2 (260-305)||(16209378-16209423)
chr2 (159-215)||(33069154-33069213)
chr2 (151-215)||(41496038-41496105)
chr2 (198-238)||(6978997-6979037)
chr2 (265-305)||(12779746-12779786)
chr2 (265-305)||(18719734-18719774)
[»] chr4 (34 HSPs)
chr4 (149-305)||(21433876-21434035)
chr4 (143-274)||(33413974-33414108)
chr4 (151-320)||(9023889-9024063)
chr4 (142-319)||(52374887-52375069)
chr4 (146-258)||(2324732-2324847)
chr4 (160-304)||(15134555-15134702)
chr4 (147-305)||(2247583-2247741)
chr4 (194-305)||(16457945-16458055)
chr4 (181-319)||(38036246-38036385)
chr4 (147-299)||(31758664-31758817)
chr4 (159-303)||(45654018-45654163)
chr4 (172-303)||(3688570-3688705)
chr4 (150-299)||(32286212-32286361)
chr4 (194-315)||(19382322-19382438)
chr4 (172-243)||(993219-993291)
chr4 (147-229)||(15134646-15134731)
chr4 (157-229)||(16577238-16577313)
chr4 (194-259)||(53127987-53128052)
chr4 (194-258)||(17181269-17181333)
chr4 (160-229)||(21433861-21433933)
chr4 (163-276)||(51577995-51578110)
chr4 (159-250)||(1338420-1338512)
chr4 (252-321)||(19382284-19382353)
chr4 (145-232)||(16577327-16577417)
chr4 (198-250)||(25592254-25592306)
chr4 (156-305)||(33414006-33414158)
chr4 (151-216)||(3688663-3688731)
chr4 (159-216)||(7403175-7403235)
chr4 (145-191)||(16458039-16458085)
chr4 (192-305)||(17508768-17508880)
chr4 (252-305)||(48791235-48791288)
chr4 (200-236)||(34119692-34119728)
chr4 (194-238)||(34397424-34397468)
chr4 (159-238)||(42516515-42516597)
[»] chr8 (39 HSPs)
chr8 (171-299)||(34504386-34504517)
chr8 (145-305)||(8402483-8402642)
chr8 (171-305)||(40175896-40176034)
chr8 (150-305)||(40694616-40694774)
chr8 (192-305)||(40696211-40696324)
chr8 (159-319)||(42072649-42072808)
chr8 (195-319)||(26018451-26018573)
chr8 (194-305)||(35586429-35586539)
chr8 (192-305)||(27072838-27072951)
chr8 (174-299)||(38835002-38835132)
chr8 (171-301)||(21124958-21125090)
chr8 (192-305)||(4994178-4994289)
chr8 (159-303)||(2288586-2288733)
chr8 (171-302)||(20271007-20271146)
chr8 (171-302)||(21057635-21057774)
chr8 (194-245)||(42209424-42209475)
chr8 (145-235)||(17893390-17893482)
chr8 (147-243)||(38357544-38357643)
chr8 (172-305)||(40175893-40176030)
chr8 (150-250)||(40566514-40566617)
chr8 (198-250)||(13260421-13260473)
chr8 (160-305)||(30649938-30650083)
chr8 (145-250)||(18998098-18998202)
chr8 (159-229)||(27072894-27072967)
chr8 (146-229)||(35586482-35586568)
chr8 (175-229)||(8402483-8402538)
chr8 (202-303)||(2171031-2171133)
chr8 (192-257)||(2478469-2478534)
chr8 (192-297)||(30262769-30262874)
chr8 (145-216)||(20271105-20271179)
chr8 (145-216)||(21057733-21057807)
chr8 (146-229)||(36009901-36009987)
chr8 (165-229)||(30650025-30650093)
chr8 (159-210)||(4994253-4994305)
chr8 (154-249)||(9814039-9814135)
chr8 (146-224)||(23848240-23848319)
chr8 (206-250)||(23848302-23848346)
chr8 (159-230)||(40694600-40694674)
chr8 (194-238)||(43042164-43042207)
[»] chr7 (36 HSPs)
chr7 (146-301)||(10056630-10056788)
chr7 (159-305)||(12275741-12275890)
chr7 (143-318)||(40134378-40134552)
chr7 (145-321)||(26862900-26863079)
chr7 (159-319)||(49106895-49107057)
chr7 (198-305)||(2276280-2276387)
chr7 (156-268)||(47497740-47497855)
chr7 (192-305)||(3235562-3235675)
chr7 (171-315)||(2276276-2276423)
chr7 (194-291)||(24516581-24516678)
chr7 (191-275)||(640901-640985)
chr7 (172-319)||(11201293-11201445)
chr7 (195-285)||(18802866-18802956)
chr7 (150-305)||(5443533-5443690)
chr7 (192-275)||(7526151-7526234)
chr7 (198-305)||(46074058-46074165)
chr7 (151-315)||(3235538-3235705)
chr7 (145-305)||(26647694-26647856)
chr7 (194-299)||(45200475-45200580)
chr7 (161-316)||(316351-316509)
chr7 (150-305)||(5452578-5452735)
chr7 (192-320)||(36992845-36992976)
chr7 (194-257)||(18089753-18089816)
chr7 (192-229)||(36129092-36129129)
chr7 (194-250)||(7017144-7017200)
chr7 (194-250)||(7032502-7032558)
chr7 (194-250)||(29356942-29356998)
chr7 (159-214)||(31042126-31042184)
chr7 (170-227)||(10056621-10056681)
chr7 (161-218)||(24516646-24516704)
chr7 (196-318)||(42986237-42986358)
chr7 (171-224)||(253661-253713)
chr7 (160-228)||(40803223-40803294)
chr7 (265-322)||(7017182-7017241)
chr7 (265-322)||(7032540-7032599)
chr7 (265-305)||(49107001-49107041)
[»] chr3 (39 HSPs)
chr3 (148-305)||(36480710-36480870)
chr3 (144-305)||(29955010-29955174)
chr3 (144-305)||(30004164-30004328)
chr3 (190-299)||(19158680-19158788)
chr3 (144-235)||(3901566-3901659)
chr3 (151-305)||(32880976-32881133)
chr3 (150-295)||(31205347-31205495)
chr3 (145-305)||(19560602-19560765)
chr3 (147-305)||(37341203-37341359)
chr3 (202-299)||(14345160-14345257)
chr3 (194-299)||(35357326-35357431)
chr3 (194-305)||(11532438-11532549)
chr3 (159-299)||(51541254-51541397)
chr3 (198-319)||(40554067-40554190)
chr3 (195-295)||(45332557-45332657)
chr3 (172-305)||(3901499-3901629)
chr3 (150-276)||(36007387-36007516)
chr3 (145-250)||(19554359-19554467)
chr3 (146-237)||(36026863-36026955)
chr3 (198-305)||(40117757-40117862)
chr3 (151-229)||(36480686-36480767)
chr3 (148-303)||(16729149-16729307)
chr3 (145-228)||(35415049-35415135)
chr3 (194-270)||(48240387-48240462)
chr3 (172-305)||(4276977-4277118)
chr3 (145-299)||(37189119-37189274)
chr3 (192-242)||(9145440-9145490)
chr3 (203-285)||(40763391-40763473)
chr3 (193-238)||(35527127-35527172)
chr3 (150-217)||(1458628-1458698)
chr3 (192-275)||(13777683-13777766)
chr3 (192-250)||(1753339-1753397)
chr3 (194-256)||(30268084-30268146)
chr3 (160-236)||(16993339-16993416)
chr3 (150-238)||(26986271-26986362)
chr3 (194-231)||(31524094-31524131)
chr3 (194-238)||(4304786-4304830)
chr3 (198-250)||(48543440-48543492)
chr3 (229-293)||(53247791-53247855)
[»] chr1 (36 HSPs)
chr1 (171-305)||(31970123-31970260)
chr1 (160-319)||(38663639-38663803)
chr1 (194-305)||(2542705-2542816)
chr1 (157-299)||(49403457-49403602)
chr1 (146-303)||(7444255-7444415)
chr1 (194-302)||(34437623-34437730)
chr1 (159-321)||(34437583-34437749)
chr1 (176-305)||(45215332-45215463)
chr1 (194-304)||(45563091-45563201)
chr1 (202-283)||(23317942-23318023)
chr1 (194-305)||(40668954-40669065)
chr1 (192-299)||(731339-731446)
chr1 (159-230)||(21281464-21281539)
chr1 (159-318)||(5695665-5695826)
chr1 (194-291)||(40374054-40374150)
chr1 (181-305)||(45925111-45925238)
chr1 (147-229)||(49822607-49822692)
chr1 (208-305)||(49822566-49822664)
chr1 (146-229)||(7444360-7444446)
chr1 (192-250)||(11120321-11120379)
chr1 (145-210)||(15366474-15366542)
chr1 (141-229)||(40669008-40669097)
chr1 (194-315)||(32543719-32543840)
chr1 (163-250)||(22336889-22336973)
chr1 (171-305)||(31970119-31970256)
chr1 (163-229)||(16257603-16257672)
chr1 (200-275)||(33422662-33422737)
chr1 (259-315)||(35752132-35752190)
chr1 (165-250)||(34783405-34783493)
chr1 (192-250)||(39131621-39131679)
chr1 (222-271)||(18075217-18075266)
chr1 (192-229)||(38663730-38663767)
chr1 (194-298)||(939359-939463)
chr1 (165-216)||(16661808-16661862)
chr1 (166-305)||(38948086-38948228)
chr1 (194-222)||(39131588-39131616)
[»] chr6 (26 HSPs)
chr6 (146-305)||(12731557-12731719)
chr6 (191-255)||(3150231-3150295)
chr6 (145-243)||(28865383-28865484)
chr6 (150-243)||(1473593-1473689)
chr6 (156-299)||(4032996-4033147)
chr6 (194-256)||(6643367-6643429)
chr6 (196-258)||(11650916-11650978)
chr6 (159-255)||(4483355-4483452)
chr6 (193-305)||(24783890-24784002)
chr6 (147-301)||(5706595-5706751)
chr6 (145-299)||(479812-479968)
chr6 (187-256)||(26328213-26328282)
chr6 (146-223)||(12424939-12425017)
chr6 (145-212)||(31946914-31946984)
chr6 (146-228)||(5706699-5706784)
chr6 (177-294)||(31945641-31945759)
chr6 (148-216)||(17600697-17600768)
chr6 (194-250)||(9358244-9358299)
chr6 (142-229)||(12731524-12731614)
chr6 (149-215)||(9645010-9645079)
chr6 (149-215)||(9651027-9651096)
chr6 (165-212)||(12424886-12424935)
chr6 (194-235)||(3625142-3625183)
chr6 (265-305)||(31946914-31946954)
chr6 (194-250)||(31989192-31989248)
chr6 (201-229)||(33182284-33182312)
[»] scaffold0003 (1 HSPs)
scaffold0003 (146-276)||(136353-136486)
[»] scaffold0015 (2 HSPs)
scaffold0015 (146-299)||(200967-201122)
scaffold0015 (154-229)||(200940-201018)
[»] scaffold0137 (2 HSPs)
scaffold0137 (144-237)||(8251-8346)
scaffold0137 (216-305)||(8228-8316)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-232)||(39193-39282)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 107 - 652
Target Start/End: Original strand, 38029478 - 38030023
Alignment:
Q  107 aaaagttagctcaaataatgaaaacggtaaatacatataagaggaatgataacaacacacattgtaacacacacttttcaacacatttttgattggttaa 206  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| |  |||||||||| ||||||||| ||| ||||||| ||||||||||||||    
T  38029478 aaaagttagctcaaataatgaaagcggtaaatgcatataagaggaatgagagaaacacacattctaacacacattttccaacacacttttgattggttaa 38029577  T
Q  207 aattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtc 306  Q
    |||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||| |||||||    
T  38029578 aattcacatgggtctcaccaaatcatgtggatctcatataaattgggtgggtttcatatgaattctaactcattaaaaagagtgtgttaaaatgtgtgtc 38029677  T
Q  307 gctagcatttctcattcatataatgatgcagacctaagaactttggcaatgtgagacacaaaatgcaacttcaaattgaccnnnnnnnnnnnnnnnnn-- 404  Q
    |||  |||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||                       
T  38029678 gctgacatttctcattcata--atgatgcagacctaagatctttgccaatgtgagacacaaaatgcaacttcaaattgaccaaaaaaaaaagttaaaaaa 38029775  T
Q  405 ttagagttttttaaatcttgatttgaagacttcaaattgttaactacgtgcatgcgtgaagtgtatgaccacacaaacgaggtagtgataaacatgtact 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38029776 ttagagttttttaaatcttgatttgaagacttcaaattgttaactatgtgcatgcgtgaagtgtatgaccacacaaacgaggtagtgataaacatgtact 38029875  T
Q  505 gccttcctttacctaattattaggaaatgagaaatattttcaataaatgaacacaatatacaaattagtaaaatgcatggactcactcacccaatcgcct 604  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38029876 tccttcctttacctaattattaggaaatgagaaatattttcaataaatgaacacaatatacaaattagtaaaatgcatggactcactcacccaattgcct 38029975  T
Q  605 catgacccaatatccttggaaaaattgcaggaggctccttcaaaagtt 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38029976 catgacccaatatccttggaaaaattgcaggaggctccttcaaaagtt 38030023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 38029262 - 38029414
Alignment:
Q  9 acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacat---------attttgttcggattgttaaacggacttcgttccg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||      
T  38029262 acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacatatggtacatattttgttcggattgttaaacggacttccttcta 38029361  T
Q  100 actctcaaaaagttagctcaaataatgaaaacggtaaatacatataagaggaa 152  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38029362 actctcaaaaagttagctcaaataatgaaagcggtaaatacatataagaggaa 38029414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 3907770 - 3907661
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||| |||||||||||| ||   |||||||||    
T  3907770 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaat--caaagagtgt 3907673  T
Q  292 gttgaaaagtgt 303  Q
    ||||||||||||    
T  3907672 gttgaaaagtgt 3907661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 42419988 - 42420153
Alignment:
Q  143 ataagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtt 239  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||   ||| |||||||||||   || |||||||||||||||||||||| |     
T  42419988 ataagaggaatgctaacaacactcattctaacacacatttttcaacacattctctttaattggttaaaacatacgtgggtcccaccaaatcatgtggatc 42420087  T
Q  240 ccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||||||||| | ||| | |||| ||| |||||||| || ||| |||||||||||||||| ||||    
T  42420088 ccatataaatttgatggatctcatgtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgt 42420153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 22399884 - 22399776
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||||||||||| |||| || ||||||| |||||  ||||| |||| ||||||| |||| ||||||||| || || |||||||||||||    
T  22399884 tttgattggttaaaattcacatgagtcctactaaatcatctgggtctcatatgaatttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgt 22399785  T
Q  294 tgaaaagtg 302  Q
    |||||||||    
T  22399784 tgaaaagtg 22399776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 25545332 - 25545223
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||  |||||| |||| |||||||||||| ||   |||||||||||    
T  25545332 tttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaat--caaagagtgtgt 25545235  T
Q  294 tgaaaagtgtgt 305  Q
    |||||| |||||    
T  25545234 tgaaaaatgtgt 25545223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 27195366 - 27195262
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||| |||||||||||||| ||||||| ||||||||| ||  ||||||||||| |||||  | ||| |||||||||| | ||||||||||||||||    
T  27195366 tttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccatataaatttggtggaatccatgtgaattttaatcaattaaaaagagtgtgt 27195267  T
Q  294 tgaaa 298  Q
    |||||    
T  27195266 tgaaa 27195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 3907630 - 3907714
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||| |||| || ||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||    
T  3907630 agagaaatgctagcaacacacattctaacaaacacttttcaacacactctttgattggttaaaattcacatgggacccaccaaat 3907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 36059359 - 36059241
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||||||||| ||||||| ||||| ||||||| |||   ||||||||||||||| |||||| ||||| ||||||||||||||  |||||||||| | ||    
T  36059359 caacacacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatg 36059260  T
Q  256 ggtttcatctgaattttaa 274  Q
    ||| |||| ||||| ||||    
T  36059259 ggtctcatgtgaatcttaa 36059241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 31273153 - 31273046
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||| ||||||||| |||||| ||  |||||||||||||| ||| ||||||||| ||||| | |||| |||||||||||| ||||||||| || |    
T  31273153 tttttgatttgttaaaatttacatggatcttaccaaatcatgtggattctatataaatttggtggatctcatgtgaattttaaccgattaaaaagtgtat 31273054  T
Q  292 gttgaaaa 299  Q
    ||| ||||    
T  31273053 gttaaaaa 31273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 41169415 - 41169526
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||| |||||||||||| | ||||||||||||| | || ||||||||||| ||||| |  ||| |||||||||||  || ||| |||||||||    
T  41169415 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaacggatcaaagagagtgtgt 41169514  T
Q  294 tgaaaagtgtgt 305  Q
    |||||| |||||    
T  41169515 tgaaaaatgtgt 41169526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 17474939 - 17474862
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggt 219  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||   | |||||||| |||||||||||||||||    
T  17474939 aagaggaatgctaacaacatacattttaacacacacttttcaacacacactctttgattgattaaaattcacatgggt 17474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 4190084 - 4190197
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaaga--gtgt 291  Q
    |||||||||||||||||||||||| ||||| ||||| | |||||| | || | |||| |||||||  ||| |||||||||||| || ||| |||  ||||    
T  4190084 tttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccatgtgaattttaacctatcaaagagaccgtgt 4190183  T
Q  292 gttgaaaagtgtgt 305  Q
    ||||||||||||||    
T  4190184 gttgaaaagtgtgt 4190197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 22399746 - 22399830
Alignment:
Q  148 aggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||| || ||||||||||| ||| || ||||||||||||||   ||||||||||| ||||||||||||| | ||||||||||    
T  22399746 aggaatgctagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacccaccaaat 22399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 3771280 - 3771224
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||  |||||||||||    
T  3771280 tttgattggttaaaattcacattggttccaccaaatcatgcgggacccatataaatt 3771224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 7721346 - 7721453
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    |||||||| ||||||| ||||||||||||| || |||| ||||||||    |||||||| |||||||   || |||||| ||||| |||||| |||||||    
T  7721346 tttttgatgggttaaagttcacatgggtcctactaaattatgtgggtcttgtataaatttggtgggtcctatgtgaattataaccaattaaagagagtgt 7721445  T
Q  292 gttgaaaa 299  Q
    ||| ||||    
T  7721446 gttaaaaa 7721453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 25545211 - 25545278
Alignment:
Q  163 acacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| | ||||| ||||    
T  25545211 acacattttaacacacatttttcaacacactctttgattggttaaaattcacatgagacccactaaat 25545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 32309763 - 32309658
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||| | |||||| | ||||  |||||||||||||||||| ||||   ||||||| ||||||||| ||||   ||||||||||||||||| || ||    
T  32309763 aagaggaacgctaacaatatacatcctaacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtccc 32309664  T
Q  242 atataa 247  Q
    ||||||    
T  32309663 atataa 32309658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 36005125 - 36005022
Alignment:
Q  202 gttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagt 301  Q
    ||||||||||||||||||| |||  ||||| |||| | ||||||||||| ||||| |  ||| |||||||||| |  ||||| ||||||| ||| |||||    
T  36005125 gttaaaattcacatgggtctcactgaatcacgtggatcccatataaatttggtggatcccatatgaattttaatcacttaaagagagtgtattgcaaagt 36005026  T
Q  302 gtgt 305  Q
    ||||    
T  36005025 gtgt 36005022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 41106516 - 41106466
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaa 248  Q
    |||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  41106516 attggttaaaattcacatcggtcgcaccaaattatgtgggtcccatataaa 41106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 35244865 - 35244906
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtg 235  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  35244865 tttgattggttaaaattcacatggatcccaccatatcatgtg 35244906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 40530010 - 40530120
Alignment:
Q  206 aaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||| ||||| ||| |||||||||||||||||   |||||||||  |||| | || | |||||||||||  ||||||  ||||||||| |||| |||||    
T  40530010 aaatttacatgagtcacaccaaatcatgtgggtctaatataaatttagtggatctcctgtgaattttaacaaattaaa--gagtgtgttaaaaaatgtgt 40530107  T
Q  306 cgctagcatttct 318  Q
     ||||||||||||    
T  40530108 tgctagcatttct 40530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 19332019 - 19332125
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    ||||||||||  | ||||||||||| |||||||   |||  ||||||||   |||||||||||||| |||||  |||||| |||||||||||||||| ||    
T  19332019 aagaggaatgccagcaacacacattttaacacatgttttcgaacacattctctttgattggttaaa-ttcacc-gggtccaaccaaatcatgtgggtccc 19332116  T
Q  242 atataaatt 250  Q
    |||||||||    
T  19332117 atataaatt 19332125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 40927758 - 40927687
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaa 227  Q
    ||||||||||| ||||||| | ||||||||| | |   |||||||||| |||||||||||||| ||||||||    
T  40927758 caacacacattataacacaaatttttcaacaaactatctttgattggtcaaaattcacatgggacccaccaa 40927687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 28907361 - 28907415
Alignment:
Q  165 acattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    ||||| ||||||||| |||||||||||||   |||||| ||||||||||||||||    
T  28907361 acattctaacacacatttttcaacacattctctttgatcggttaaaattcacatg 28907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 28943756 - 28943810
Alignment:
Q  165 acattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    ||||| ||||||||| |||||||||||||   |||||| ||||||||||||||||    
T  28943756 acattctaacacacatttttcaacacattctctttgatcggttaaaattcacatg 28943810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 148 - 319
Target Start/End: Complemental strand, 42094365 - 42094196
Alignment:
Q  148 aggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccata 244  Q
    ||||||| || ||||||||||| |||||||||||||||||||||   | |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  42094365 aggaatgctagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatgg-tcccaccaaatcatgtgggtcccata 42094267  T
Q  245 taaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    |||||| |||||||  ||| ||||||||||||    ||| |||||||||| ||| |||||| |||||||||||||    
T  42094266 taaatttggtgggtcccatgtgaattttaacc----aaagagagtgtgttaaaatgtgtgttgctagcatttctc 42094196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 25666965 - 25666801
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttc 240  Q
    |||||| |||| || ||||||||||| ||||| ||| ||||||||||| |   ||||||  |||||||| ||||||| |||||||||||||||| |||||    
T  25666965 taagagaaatgctagcaacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttc 25666866  T
Q  241 catataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||| ||||||| |||| |||||||||| | || ||| ||||||||||||||| |||||    
T  25666865 catataaatttggtgggtctcatgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgt 25666801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 1469855 - 1469748
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| || ||| |||||||||||| |||||| |||||||    
T  1469855 ttttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaatagagtgt 1469756  T
Q  292 gttgaaaa 299  Q
    ||||||||    
T  1469755 gttgaaaa 1469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 42029342 - 42029478
Alignment:
Q  172 aacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaa 268  Q
    |||||||| ||||||||||| |   ||||||| ||||||||||| |||||||| ||||||||||| ||   ||||||||||| ||||||| |||| ||||    
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaa 42029441  T
Q  269 ttttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||| || ||||| |||||||||||||||||||    
T  42029442 ttttaaccaataaaaaaaagtgtgttgaaaagtgtgt 42029478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 37810260 - 37810153
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| |||||||  ||| |||||| ||||| || ||| |||||||||    
T  37810260 tttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccatgtgaattataaccaatcaaagagagtgtgt 37810161  T
Q  294 tgaaaagt 301  Q
    ||||||||    
T  37810160 tgaaaagt 37810153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 3466551 - 3466419
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||| || ||||||||||| |||||||||||||  |||| | |   |||||||||||||||||||||||||| |||| ||||| ||||||| ||||    
T  3466551 gaggaatgctagcaacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccat 3466452  T
Q  244 ataaattgggtgggtttcatctgaattttaacc 276  Q
    || |||| ||||||| |||| ||||||||||||    
T  3466451 atgaatttggtgggtctcatgtgaattttaacc 3466419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 33069283 - 33069170
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||||||||||| |||| |||||||||| |||| |||||||| ||||||||| | ||||||| | || |||||||||||| || ||| | |||||    
T  33069283 tttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggtctaatgtgaattttaaccgatcaaagaaagtgt 33069184  T
Q  292 gttgaaaagtgtgt 305  Q
    ||||||||||||||    
T  33069183 gttgaaaagtgtgt 33069170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 323
Target Start/End: Original strand, 42251188 - 42251319
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||  | ||||||||| ||||| |  ||| |||||||||| | || ||| |||||||||    
T  42251188 tttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtggatcccatgtgaattttaatcaatcaaagagagtgtgt 42251287  T
Q  294 tgaaaa--gtgtgtcgctagcatttctcattc 323  Q
    ||||||  |||||| |||||||||||||||||    
T  42251288 tgaaaagtgtgtgttgctagcatttctcattc 42251319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 146 - 319
Target Start/End: Original strand, 18719707 - 18719882
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||||||| || ||||||||||| |||||||   |||||||||||   ||||||||||||||||||||||| | || |||||||||||||||||| |||    
T  18719707 agaggaatgctagcaacacacattctaacacat--ttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtccca 18719804  T
Q  243 tataaattgggtgggtttcatctgaattttaacccattaaaaaga--gtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    |||||||| | ||||| |||| | || ||||||| || ||| |||  |||||||  || |||||| |||||||||||||    
T  18719805 tataaatttgatgggtctcatgt-aaatttaaccaatcaaagagagtgtgtgttagaatgtgtgtagctagcatttctc 18719882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 41496175 - 41496062
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||||| ||||||||| ||| | ||| || |||||||||||| || ||| | |||||    
T  41496175 tttttgattgattaaaattcacatgggtcacactaaatcaagtgggttctatataaatttggtagattttatgtgaattttaaccaatcaaagatagtgt 41496076  T
Q  292 gttgaaaagtgtgt 305  Q
     |||||||||||||    
T  41496075 attgaaaagtgtgt 41496062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 16209375 - 16209509
Alignment:
Q  172 aacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaa 268  Q
    |||||||||||| ||||||| |   ||| ||||||||||||||||||| || |||||||||  ||| ||| ||||||||||| |||||||||||| ||||    
T  16209375 aacacacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgggtttcatttgaa 16209474  T
Q  269 ttttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    |||||||  || ||| ||| || ||||||||||||    
T  16209475 ttttaactgatcaaagagaatgcgttgaaaagtgt 16209509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 4237366 - 4237239
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| |  ||| | |||||||||| || |||||||   |    
T  4237366 tttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaatcaaaaagaaaat 4237267  T
Q  292 gttgaaaagtgtgtcgctagcatttctc 319  Q
    |||| ||||||| | ||||| |||||||    
T  4237266 gttggaaagtgtattgctagtatttctc 4237239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 2683515 - 2683398
Alignment:
Q  172 aacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaa 268  Q
    |||||||||||||||  |||   ||||||||||||||||||| | |||||| |||||||||||||||||| |  |||||||| |||||||  ||| ||||    
T  2683515 aacacacacttttcacgacactctttttgattggttaaaatttatatgggttccaccaaatcatgtgggtccagtataaattcggtgggtcccatatgaa 2683416  T
Q  269 ttttaacccattaaaaag 286  Q
    |||||| | |||||||||    
T  2683415 ttttaatcaattaaaaag 2683398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 45300503 - 45300370
Alignment:
Q  175 acacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattt 271  Q
    ||||||||||||| |||   |||||||||||||||||||||||||| | ||| ||||| || ||||| ||||||| |||  ||||||  ||| || ||||    
T  45300503 acacacttttcaatacactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgggtcccatatgtattt 45300404  T
Q  272 taacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||| || |||| |||||||||||||| |||||    
T  45300403 taaccaatcaaaaggagtgtgttgaaaaatgtgt 45300370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 44247563 - 44247664
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||| ||||| ||||| | ||| |  ||| |||||||||||| || ||| |||||||||    
T  44247563 tttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaatcaaagagagtgtgt 44247662  T
Q  294 tg 295  Q
    ||    
T  44247663 tg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 319
Target Start/End: Original strand, 33171624 - 33171751
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||| |||||||||| |||||||||||||||||||||  |  |  |||||||| ||||||   ||| |||| ||||||| || ||| |||||||||    
T  33171624 tttgattgtttaaaattcatatgggtcccaccaaatcatgtaagacctgtataaatttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgt 33171723  T
Q  294 tgaaaagtgtgt--cgctagcatttctc 319  Q
    ||||||||||||   |||||||||||||    
T  33171724 tgaaaagtgtgtggtgctagcatttctc 33171751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 9430162 - 9430273
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||| ||||||||| | || | ||| |||||||||||||||| ||||| ||||| | |||| ||||| |||||||||||| || ||| ||| | |||    
T  9430162 tttgattagttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaatcaaatagaatatgt 9430261  T
Q  294 tgaaaagtgtgt 305  Q
    ||||||||||||    
T  9430262 tgaaaagtgtgt 9430273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 40358631 - 40358780
Alignment:
Q  153 tgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaat 249  Q
    ||||||||||||||||| |||||||||||||  || |||||   ||||||  || |||||||||||| |||||| ||||| ||||| || |||| | |||    
T  40358631 tgataacaacacacattttaacacacactttctaatacattcgctttgatctgtcaaaattcacatgagtcccatcaaattatgtgagtcccatgttaat 40358730  T
Q  250 tgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    | |||||||  ||| | |||||||||| || ||||| || ||||||||||    
T  40358731 ttggtgggtcccatgtaaattttaacctataaaaaatagggtgttgaaaa 40358780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 15194638 - 15194540
Alignment:
Q  205 aaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    |||||||||||| ||||||||||||||||| ||| ||||||| ||| |||| |   ||| ||| |||||||| || |||||||||||| ||||||||||    
T  15194638 aaaattcacatgtgtcccaccaaatcatgtcggtcccatatatatttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgt 15194540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 151 - 305
Target Start/End: Original strand, 45300346 - 45300503
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatc-atgtgggttccatata 246  Q
    |||| ||||||||||  || ||||||||| ||||||||||| |   |||||||||||||||| || ||||| ||||| ||||| || ||||  ||||||     
T  45300346 aatgttaacaacacatcttctaacacacatttttcaacacactccttttgattggttaaaatacatatgggacccactaaatctatatgggacccatat- 45300444  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||| | |||  | ||| |||||||||||| || ||||||||||| |||||||||||||    
T  45300445 aatttgatggaatccatgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 1930669 - 1930801
Alignment:
Q  171 taacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctga 267  Q
    ||||||||| ||||||| |||   ||||||||||||||||||||||||  || ||| ||||| |||||||| ||||||||||| ||| ||| || | | |    
T  1930669 taacacacatttttcaagacactctttttgattggttaaaattcacatatgttccatcaaattatgtgggtcccatataaatttggtaggtctcgtgtaa 1930768  T
Q  268 attttaacccattaaaaagagtgtgttgaaaagt 301  Q
     ||||| || || ||||| |||||||||||||||    
T  1930769 cttttagccaatcaaaaa-agtgtgttgaaaagt 1930801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 9430297 - 9430229
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    |||| ||| |||||||||| ||||||||||||||||||| |||   |||||||||||||||||||||||    
T  9430297 aatgctaataacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacatg 9430229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 12779480 - 12779561
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacatt--tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||| || |||||||| || ||||| ||| |||||||||||||  |||||||||||||||||||||||||  |||||||||    
T  12779480 gaatgctagcaacacaccttctaacatacatttttcaacacattcttttgattggttaaaattcacatgggatccaccaaat 12779561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 42029493 - 42029421
Alignment:
Q  160 aacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||| |||| |||||||||||||||||||||   ||||| ||||||||||||||||||| | ||||||||||    
T  42029493 aacacgcattctaacacacacttttcaacacacttttttttattggttaaaattcacatgagacccaccaaat 42029421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 6979148 - 6979076
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacat--ttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||||||| ||||||||||||||||||||||  |||| ||||||||||||| |||| || |||| |||||    
T  6979148 caacacacattttaacacacacttttcaacacattttttttattggttaaaatttacattggacccatcaaat 6979076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 33171736 - 33171678
Alignment:
Q  174 cacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||||||||||||| |   |||||||||||||| |||||||||||||||||||||    
T  33171736 cacacacttttcaacacactctctttgattggttaaatttcacatgggtcccaccaaat 33171678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 12703459 - 12703552
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaat 249  Q
    ||||||||||| ||||||||| ||||||| ||| |||   ||||||||||| ||||||||| || ||| |||||||| ||  ||||||||||||    
T  12703459 caacacacattttaacacacatttttcaatacactttctttgattggttaatattcacatgagttccatcaaatcatctgaattccatataaat 12703552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 15194522 - 15194595
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||| ||| ||||| |||||||||| ||||   ||||||||||||||||| ||||||||||| ||||||||    
T  15194522 caacacaaattttaacatacacttttcagcacactctttttgattggttaaaagtcacatgggtcgcaccaaat 15194595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 29160941 - 29160844
Alignment:
Q  208 attcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||| ||||| |||||||||| ||||||||  ||||||||||  ||| || |||| || ||||||| | |||||| |  ||||||||||||||||||    
T  29160941 attcatatgggccccaccaaattatgtgggtctcatataaatttagtgagtctcatgtggattttaatcaattaaagatggtgtgttgaaaagtgtgt 29160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 30841032 - 30841073
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatg 233  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  30841032 tttttgattggttaaaattcatatgggtcctaccaaatcatg 30841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 35715143 - 35715053
Alignment:
Q  141 atataagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaa 228  Q
    ||||||||| ||||  | ||||||||||| ||| ||||||||||||| ||| |   ||||||||||||||||| |||| ||||||| ||||    
T  35715143 atataagagaaatgccagcaacacacattttaagacacacttttcaatacactctctttgattggttaaaatttacataggtcccatcaaa 35715053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 37810139 - 37810292
Alignment:
Q  165 acattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattgggtgggttt 260  Q
    ||||| |||| || ||||||||||||| |   |||||||||||| |||||||||||| ||||||||| | || ||||  |||| | |||| ||||||       
T  37810139 acattttaactcatacttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacccatct-aatttggtgggacc 37810237  T
Q  261 catctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatt 315  Q
    ||| |||||||||||| || |||  ||||||| || ||||||||| |||||||||    
T  37810238 catgtgaattttaaccaatcaaagtgagtgtgatggaaagtgtgttgctagcatt 37810292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 17383853 - 17383774
Alignment:
Q  215 tgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgtt 294  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||   ||| ||| |||||||| || ||| ||||||||||    
T  17383853 tgggtcccaccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgtgtt 17383774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 36283619 - 36283540
Alignment:
Q  172 aacacacacttttcaacacatttttg-attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||| ||||||||| || |||||  |||| ||||||||| ||| ||||| |||||||||||||||  |||||||||||    
T  36283619 aacacatacttttcaatacttttttttattgattaaaattcgcataggtcctaccaaatcatgtgggacccatataaatt 36283540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 44487178 - 44487288
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||||||||||| ||| ||||||||||| |  |  ||| ||||||| ||||    | || |||||||||||| || ||||||||||| |    
T  44487178 tttgattggttaaaattcacatgagtctcaccaaatcatctatg-cccaaataaatttggtgaagcttatgtgaattttaaccgatcaaaaagagtgtat 44487276  T
Q  294 tgaaaagtgtgt 305  Q
    | ||||||||||    
T  44487277 taaaaagtgtgt 44487288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 42251302 - 42251242
Alignment:
Q  172 aacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||||||||||||||| |   |||||||| ||||||||||||||||  |||||||||    
T  42251302 aacacacacttttcaacacactctctttgattgattaaaattcacatgggatccaccaaat 42251242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 16209423 - 16209378
Alignment:
Q  260 tcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||| |||||||||||| |||||| ||||||||||| |||||||||    
T  16209423 tcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgt 16209378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 33069154 - 33069213
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacat 215  Q
    ||||||||||| || ||||||||||||||||||   | |||||| |||||||||||||||    
T  33069154 caacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacat 33069213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 41496038 - 41496105
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacat 215  Q
    |||| |||||||| | ||| ||||||||||||||||| ||| |   ||||||||||||||||||||||    
T  41496038 aatggtaacaacatatattttaacacacacttttcaatacactatctttgattggttaaaattcacat 41496105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 6978997 - 6979037
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  6978997 attggttaaaattcacatgagtcctatcaaatcatgtgggt 6979037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 12779746 - 12779786
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
T  12779746 tgaattttaaccaattaaaaagagtgtgttggtaagtgtgt 12779786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 18719774 - 18719734
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||||| || ||||||||||||||||||| |||||    
T  18719774 tgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 18719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 21434035 - 21433876
Alignment:
Q  149 ggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatat 245  Q
    |||||| || ||||||||||| ||||| |||||||||||||||   |  ||||||||||||||||||||||| ||||||||||||||||||||  |||||    
T  21434035 ggaatggtagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatat 21433936  T
Q  246 aaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||| ||||||| |||| |||||||||||| || ||| ||||||||||||||| |||||    
T  21433935 aaatttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgt 21433876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 33413974 - 33414108
Alignment:
Q  143 ataagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtt 239  Q
    ||||||| ||||  ||||| ||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| ||||||||||||| ||||||     
T  33413974 ataagagaaatgccaacaaaacacattgtaacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtc 33414073  T
Q  240 ccatataaattgggtgggtttcatctgaattttaa 274  Q
    | ||||||||| |||||||  ||| ||||||||||    
T  33414074 ctatataaatttggtgggtcccatatgaattttaa 33414108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 9023889 - 9024063
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataa 247  Q
    |||| |||||| ||||||| ||||| |||||||| ||||||   ||||||||||| ||||||||||||| |||||| ||||||||||| || ||||||||    
T  9023889 aatgttaacaatacacattttaacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccatataa 9023988  T
Q  248 attgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtg--tcgctagcatttctca 320  Q
    |||| ||||||  ||| | |||||||||  || ||| ||| ||||||||||||||||  | ||||||||||||||    
T  9023989 attgagtgggtcccatgtaaattttaacaaatcaaagagaatgtgttgaaaagtgtgtattgctagcatttctca 9024063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 142 - 319
Target Start/End: Original strand, 52374887 - 52375069
Alignment:
Q  142 tataagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||   | |||||| | ||||||||||||||| || |||||||| ||||||||    
T  52374887 tatacgaggaatgctaacaacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggt 52374986  T
Q  239 tccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa--gtgtgtcgctagcatttctc 319  Q
     || |||||||| | ||| |   || |||||||||||| || ||||||||||| |||||||  |||||| |||| ||||||||    
T  52374987 cccgtataaatttgatggatcaaatgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgttgctaacatttctc 52375069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 2324732 - 2324847
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    |||||||||||||||||||||||| |||| |||||||||||| | | |   ||||||||||||||||||||||| ||  ||||||||||||||||| |||    
T  2324732 agaggaatgataacaacacacattttaacgcacacttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtccca 2324831  T
Q  243 tataaattgggtgggt 258  Q
    |||||||| |||||||    
T  2324832 tataaatttggtgggt 2324847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 15134555 - 15134702
Alignment:
Q  160 aacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    |||||| ||| ||||||||| |||||||||||||   ||| |||||||||||||||||||||||| || ||||||| ||||| ||||||||||| ||||     
T  15134555 aacacaaattttaacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtga 15134654  T
Q  257 gtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtg 304  Q
    ||  ||| |||||||||||| || | | | ||||||||||||||||||    
T  15134655 gtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtg 15134702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 2247741 - 2247583
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||| |||||||||||||| ||||||||  ||| |||| || |   ||||||||||||||||| |||||| ||||||||||||||||||||  |||    
T  2247741 gaggaatgctaacaacacacattttaacacac--tttccaacccactctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcat 2247644  T
Q  244 ataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||  |||| | || | |||||||||| | |||||| |||||||||||||||||||||    
T  2247643 ataaatt-tgtggatctcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgt 2247583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 16457945 - 16458055
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |||  |||| ||||| | || ||| |||||||||    
T  16457945 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctcacatgaa-tttaatcgatcaaagagagtgtgt 16458043  T
Q  294 tgaaaagtgtgt 305  Q
    ||||||||||||    
T  16458044 tgaaaagtgtgt 16458055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 38036246 - 38036385
Alignment:
Q  181 ttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaaccc 277  Q
    |||||||||||||||   ||||||||||||||||||||| |||||  ||||| |||||||||||||||||||| | ||||| |||| |||||||||||      
T  38036246 ttttcaacacattttctttgattggttaaaattcacatgagtccc--caaattatgtgggttccatataaatttgttgggtctcatgtgaattttaacaa 38036343  T
Q  278 attaaaaagagtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    || ||| | | |||||| ||| |||||| |||||||||||||    
T  38036344 atcaaagacaatgtgttaaaatgtgtgttgctagcatttctc 38036385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 147 - 299
Target Start/End: Original strand, 31758664 - 31758817
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||| ||| |||||||||| ||||||||  |||||||||||||   ||||||||||||||||||||||  |  ||||||||||||||||||  |||    
T  31758664 gaggaatggtaaaaacacacattttaacacac--ttttcaacacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcat 31758761  T
Q  244 ataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
     |||||| ||||||| ||||  ||||||||| | || ||| ||| |||||||||||    
T  31758762 gtaaatttggtgggtctcataagaattttaatcaatcaaagagaatgtgttgaaaa 31758817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 45654163 - 45654018
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||| ||||| ||||||| | |||| ||||||   |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |     
T  45654163 caacatacattctaacacatattttttaacacactttttttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttgata 45654064  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    ||| |||| | |||||  | ||| | ||||||||||||||||||||||    
T  45654063 ggtctcatataaattt--aaccaatcaaaagagtgtgttgaaaagtgt 45654018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 3688570 - 3688705
Alignment:
Q  172 aacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataa-attgggtgggtttcatctga 267  Q
    |||||||| |||||||||||||||   ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||  || | |||||  ||| |||    
T  3688570 aacacacatttttcaacacattttctttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccatataattttagatgggtcacatgtga 3688669  T
Q  268 attttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    ||||||||| || ||| | ||||||||| |||||||    
T  3688670 attttaaccaatcaaagaaagtgtgttggaaagtgt 3688705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 299
Target Start/End: Original strand, 32286212 - 32286361
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacattt-ttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaa 248  Q
    ||||| |||||||| | ||| ||| | ||| ||||||||||  || ||||||  |||||||||||||| ||||||||||||||||| || || |||||||    
T  32286212 gaatgctaacaacaaatattttaagatacatttttcaacactcttattgattctttaaaattcacatgagtcccaccaaatcatgt-ggatcaatataaa 32286310  T
Q  249 ttgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    || ||| || | ||| |||||||||||| || |||||||||||||||||||    
T  32286311 tttggttggatccatgtgaattttaaccaataaaaaagagtgtgttgaaaa 32286361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 194 - 315
Target Start/End: Original strand, 19382322 - 19382438
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||     |||||||| || |||   ||| | |||||||||| || |||||||||||||    
T  19382322 tttgattggttaaaattcacatggatcccaccaaatcatgtggg-----tataaatttggcgggacccatataaattttaaccaatcaaaaagagtgtgt 19382416  T
Q  294 tgaaaagtgtgtcgctagcatt 315  Q
    | |||||| ||| | |||||||    
T  19382417 taaaaagtctgtagttagcatt 19382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 993219 - 993291
Alignment:
Q  172 aacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  993219 aacacacatctttcaacacactctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccat 993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 15134731 - 15134646
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||   | | ||||||||||||||||||||||| | ||||||||    
T  15134731 gaggaatgctaacaacacacattttaacgcacacttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaat 15134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 16577238 - 16577313
Alignment:
Q  157 aacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||||||||| ||||||||| |||||||||||||   ||||||| ||||||||| |||| |||||||||||||    
T  16577238 aacaacacacattctaacacacatttttcaacacattctgtttgatttgttaaaatttacataggtcccaccaaat 16577313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 53127987 - 53128052
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtt 259  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||||| ||||||||    
T  53127987 tttgattggttaaaactcacatgggtcccaccatatcaagtgggtcctatataaatttggtgggtt 53128052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 17181333 - 17181269
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggt 258  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||  |||||||||| |||||||    
T  17181333 tttgattagttaaaattcacataggtcccaccaaatcacgtgggtctcatataaatttggtgggt 17181269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 21433861 - 21433933
Alignment:
Q  160 aacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||||| ||||||||| ||||||||||| |   ||||||||||||||||||||||| | ||||||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaat 21433933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 51577995 - 51578110
Alignment:
Q  163 acacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtt 259  Q
    ||||||| ||||| | |||| ||||||||||   ||||||| |||||||||||||||||||||||||| || ||| |||  |||| ||||| |||||| |    
T  51577995 acacattctaacatatacttatcaacacattcattttgatttgttaaaattcacatgggtcccaccaattcgtgtcggtctcatacaaatttggtggg-t 51578093  T
Q  260 tcatctgaattttaacc 276  Q
     ||| ||||||||||||    
T  51578094 ccatgtgaattttaacc 51578110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 1338420 - 1338512
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||| ||| ||||||||| ||||||||||  | ||||||||||||||| |||||||| |||||||||||  | ||||  |||||||||||    
T  1338420 caacacatattttaacacacatttttcaacactctctttgattggttaaaaatcacatggatcccaccaaattgtatgggacccatataaatt 1338512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 19382353 - 19382284
Alignment:
Q  252 ggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctcat 321  Q
    |||||| | ||| |||||||||||| || ||| ||||||||||| ||||||||| ||||||||| |||||    
T  19382353 ggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgttgctagcattactcat 19382284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 16577417 - 16577327
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcat 232  Q
    |||||||| | |||||| ||||||| ||||| |||||||| || | |||   ||||||||||||||| |||||||||| ||| ||||||||    
T  16577417 aagaggaacgctaacaatacacattttaacatacactttttaatatattctatttgattggttaaaactcacatgggttccaacaaatcat 16577327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 25592306 - 25592254
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||||||||||  | |||||||||||||||||||||| | |||||||||    
T  25592306 attggttaaaattcattttggtcccaccaaatcatgtgggtcctatataaatt 25592254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 33414158 - 33414006
Alignment:
Q  156 taacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattg 251  Q
    |||||||||||||| || |||||||| || ||||||   | |||||||| |||||||||| ||||| ||||||||| | || | ||  |||  |  |||     
T  33414158 taacaacacacattatagcacacactattaaacacatcttatttgattgattaaaattcatatgggacccaccaaatttatataggacccacgt-gattt 33414060  T
Q  252 ggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||| | ||| |||||||||||| || ||| |||||||||||||||||||||    
T  33414059 ggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 33414006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 3688731 - 3688663
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatg 216  Q
    |||| |||||||||||||| ||| | ||||||| ||||||| |||   |||||||||||||||||||||    
T  3688731 aatgctaacaacacacattttaatatacactttccaacacactttctttgattggttaaaattcacatg 3688663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 7403235 - 7403175
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    ||||||| ||| ||||||||||| ||||||||| |   |||||||||||||||||||||||    
T  7403235 caacacatattttaacacacactattcaacacactctctttgattggttaaaattcacatg 7403175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 16458085 - 16458039
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca 191  Q
    ||||| |||| || ||||||||||| |||||||||||||||||||||    
T  16458085 aagagaaatgctagcaacacacattctaacacacacttttcaacaca 16458039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 17508880 - 17508768
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    |||||||||| |||||  ||||||| |||||||||||||| || |  ||||| |||||| ||||   ||||| | ||||||||   || |||||||||||    
T  17508880 tttttgattgattaaatatcacatgagtcccaccaaatcaggtagaatccatgtaaatttggtgaaattcatgt-aattttaataaatcaaaaagagtgt 17508782  T
Q  292 gttgaaaagtgtgt 305  Q
    |||||||| |||||    
T  17508781 gttgaaaaatgtgt 17508768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 48791288 - 48791235
Alignment:
Q  252 ggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||| ||| ||||||| |||| |||||| ||||||||||| |||||||||    
T  48791288 ggtgggttccatatgaatttcaaccgattaaagagagtgtgttggaaagtgtgt 48791235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 34119728 - 34119692
Alignment:
Q  200 tggttaaaattcacatgggtcccaccaaatcatgtgg 236  Q
    |||||||||||||||||||||| || |||||||||||    
T  34119728 tggttaaaattcacatgggtcctactaaatcatgtgg 34119692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 34397424 - 34397468
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    |||||||| ||||||||||||||||||  || |||||||||||||    
T  34397424 tttgattgattaaaattcacatgggtcgtacaaaatcatgtgggt 34397468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 42516597 - 42516515
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    ||||||| ||| |||||||||||||||||||||||   |||  |||||| ||||||||||  ||| ||| ||| |||||||||    
T  42516597 caacacatattttaacacacacttttcaacacattctctttatttggtttaaattcacataagtcacactaaaccatgtgggt 42516515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 34504517 - 34504386
Alignment:
Q  171 taacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctga 267  Q
    ||||| |||||||||||||||   |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||| ||| ||| |||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccatgtga 34504418  T
Q  268 attttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||||||||| || |||||||||||||||||||    
T  34504417 attttaaccaatcaaaaagagtgtgttgaaaa 34504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 145 - 305
Target Start/End: Complemental strand, 8402642 - 8402483
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca-tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||||| || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| || |||||| ||||||||||||||||||  ||||    
T  8402642 aagaggaatgctagcaacacacattttaacacacacttttcaacacactatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccat 8402543  T
Q  244 ataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    || |||| | ||||   ||| |||||||||| | ||   |||||||||||||||||||||||    
T  8402542 attaatttgttgggacccatgtgaattttaaacaat--caaagagtgtgttgaaaagtgtgt 8402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 40176034 - 40175896
Alignment:
Q  171 taacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctga 267  Q
    |||||||||||||| |||||| |   ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |  ||| |||    
T  40176034 taacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtga 40175935  T
Q  268 attttaacccat-taaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||||||| ||  ||||| |||||||||||||||||||    
T  40175934 attttaaccaataaaaaaaaagtgtgttgaaaagtgtgt 40175896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 150 - 305
Target Start/End: Complemental strand, 40694774 - 40694616
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    |||| ||| |||||||| || ||||||||||||||||| |||   ||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||    
T  40694774 gaattatagcaacacacgttttaacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatata 40694675  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
     ||| |||||||  ||| | |||||||||| || ||| ||| ||||||| ||| |||||    
T  40694674 gatttggtgggtcgcatgttaattttaaccaatcaaatagattgtgttgtaaaatgtgt 40694616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 40696211 - 40696324
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||  ||| | |||||||||| || ||| ||| |||    
T  40696211 tttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtcgcatgttaattttaaccaatgaaagagattgt 40696310  T
Q  292 gttgaaaagtgtgt 305  Q
    |||| ||| |||||    
T  40696311 gttgcaaaatgtgt 40696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 319
Target Start/End: Original strand, 42072649 - 42072808
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    |||| |||||| ||||||||||||  ||||||| |   ||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||| ||||    
T  42072649 caacgcacattttaacacacactt--caacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtg 42072746  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    |||  ||| | |||||||||| || |||||||  ||||| ||| |||||| ||||| |||||||    
T  42072747 ggtcccatgtaaattttaaccaataaaaaaga--gtgttaaaatgtgtgttgctagtatttctc 42072808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 26018573 - 26018451
Alignment:
Q  195 ttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgtt 294  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| ||   |||||||||||| || ||  ||||||||||    
T  26018573 ttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtgggtctc--gtgaattttaaccaatcaacgagagtgtgtt 26018476  T
Q  295 gaaaagtgtgtcgctagcatttctc 319  Q
     |||  ||||| | |||||||||||    
T  26018475 aaaatatgtgttgttagcatttctc 26018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 35586429 - 35586539
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||  |||||||||| |||||||   || |||||||||| | |||||| ||| |||||    
T  35586429 tttgattggttaaaattcacacgg-tcccaccaaatcatgtgagtctcatataaatttggtgggtcctatgtgaattttaatcaattaaagagaatgtgt 35586527  T
Q  294 tgaaaagtgtgt 305  Q
    ||||||||||||    
T  35586528 tgaaaagtgtgt 35586539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 27072838 - 27072951
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||| |||||||||||||||  | |||| ||||||||||||||| | ||||||||||| |||||||   || | |||||||||| || ||||||| |||    
T  27072838 ttttttattggttaaaattcatgtaggtctcaccaaatcatgtggatcccatataaatttggtgggtccaatgtaaattttaaccaatcaaaaagaatgt 27072937  T
Q  292 gttgaaaagtgtgt 305  Q
    ||||||||||||||    
T  27072938 gttgaaaagtgtgt 27072951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 38835002 - 38835132
Alignment:
Q  174 cacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaatt 270  Q
    ||||||| ||||||||||||   ||||||||  ||||||||||||||||| |||||||||||| |||| ||||||||||| ||| | ||  || ||||||    
T  38835002 cacacacatttcaacacattctctttgattgactaaaattcacatgggtctcaccaaatcatgcgggtcccatataaatttggtagattctatgtgaatt 38835101  T
Q  271 ttaacccattaaaaagag--tgtgttgaaaa 299  Q
    |||||| || ||||||||  |||||||||||    
T  38835102 ttaaccaatcaaaaagagaatgtgttgaaaa 38835132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 21125090 - 21124958
Alignment:
Q  171 taacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctga 267  Q
    ||||||| |||||| ||||||||   |||||||| |||||||| ||||||||| || |||||||||||| | ||||||||||| | ||| || ||| |||    
T  21125090 taacacatactttttaacacattctatttgattgattaaaatttacatgggtctcatcaaatcatgtggatcccatataaatttgatggattccatatga 21124991  T
Q  268 attttaacccattaaaaagagtgtgttgaaaagt 301  Q
    ||||||| ||| | |||||||||||| |||||||    
T  21124990 attttaa-ccaatcaaaagagtgtgtcgaaaagt 21124958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 4994178 - 4994289
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||| |||||||||||  |||||| ||||   |||||||||| ||   |||||||||    
T  4994178 tttttgattggttaaaattcttatgagtcccaccaaatcatgtgggtcccatataaattttgtgggtctcatacaaattttaaccaat--caaagagtgt 4994275  T
Q  292 gttgaaaagtgtgt 305  Q
    ||| |||| |||||    
T  4994276 gttaaaaattgtgt 4994289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 2288586 - 2288733
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||||| ||| |||||||||||||  |||||| |   ||||||||||||||||| ||||||||  ||||||||||  ||||| ||||||||||| | ||    
T  2288586 caacacatattctaacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttgatg 2288685  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    | |  ||| |||||||||||| || ||| ||||  |||||||||||||    
T  2288686 gatcccatgtgaattttaaccaatcaaagagagattgttgaaaagtgt 2288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 20271007 - 20271146
Alignment:
Q  171 taacacacacttttcaacacatt-tttgattggttaaaa--ttcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggt-----ttca 262  Q
    ||||||||| ||||||||||  | |||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||   |||||      |||    
T  20271007 taacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatca 20271106  T
Q  263 tctgaattttaacccattaaaaagagtgtgttgaaaagtg 302  Q
    | |||||||||||  || ||| ||||||||||||||||||    
T  20271107 tgtgaattttaactaatcaaagagagtgtgttgaaaagtg 20271146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 21057635 - 21057774
Alignment:
Q  171 taacacacacttttcaacacatt-tttgattggttaaaa--ttcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggt-----ttca 262  Q
    ||||||||| ||||||||||  | |||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||   |||||      |||    
T  21057635 taacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatca 21057734  T
Q  263 tctgaattttaacccattaaaaagagtgtgttgaaaagtg 302  Q
    | |||||||||||  || ||| ||||||||||||||||||    
T  21057735 tgtgaattttaactaatcaaagagagtgtgttgaaaagtg 21057774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 42209475 - 42209424
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatat 245  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  42209475 tttgattggttaaaattcacatggttcccaccatatcatgtgggttccatat 42209424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 17893482 - 17893390
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaac--acatttttgattggttaaaattcacatgggtcccaccaaatcatgtg 235  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||  || ||||| ||| ||||||||   || ||||||||||||||||||||    
T  17893482 aagagaaatgataacaacacacattttaacacacatttttcaacatactttttttattagttaaaatgtgcacgggtcccaccaaatcatgtg 17893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 38357544 - 38357643
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||| || ||||||||||| || |||||||||| ||||||| |   ||||||| ||| ||| ||||||| | ||||||||||||||||||||||||    
T  38357544 gaggaatgctagcaacacacattctagcacacactttccaacacactctctttgattagttgaaactcacatgagacccaccaaatcatgtgggttccat 38357643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 40175893 - 40176030
Alignment:
Q  172 aacacacacttttcaacaca----tttttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattgggtgggtttcatctg 266  Q
    ||||||||||||||||||||    ||||| |||||||||||||||||||||  |||||||| | || ||||  ||| || |||| ||||||   ||| ||    
T  40175893 aacacacacttttcaacacactttttttttattggttaaaattcacatgggatccaccaaatttatatgggacccacat-aatttggtgggacccatgtg 40175991  T
Q  267 aattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||| ||||||| ||||||||| ||||||||||    
T  40175992 aattttaaccaattaaaaggagtgtgttaaaaagtgtgt 40176030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 40566617 - 40566514
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    ||||| || ||||||||||| ||||||| | ||||||||||    ||||||||||||||||||||||||| ||| ||||||||||||  || ||||| ||    
T  40566617 gaatgttagcaacacacattttaacacatatttttcaacacgctctttttgattggttaaaattcacatgagtctcaccaaatcatggaggatccatgta 40566518  T
Q  247 aatt 250  Q
    ||||    
T  40566517 aatt 40566514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 13260421 - 13260473
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  13260421 attggttaaaatgcacatgggtcccaccaactcatgtgggtcccatataaatt 13260473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 30649938 - 30650083
Alignment:
Q  160 aacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggt 258  Q
    ||||| |||| |||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||  | || || |||| |||||| ||||| |    
T  30649938 aacactcattttaactcacacttttcaacacattctttgatttgttaaaattcacatggatcccaccatat--tatgagtcccatgtaaatttggtggat 30650035  T
Q  259 ttcatctgaattttaac-ccattaaaaagagtgtgttgaaaagtgtgt 305  Q
      ||| ||||||||||| ||| | |||| | | |||||||||||||||    
T  30650036 cccatgtgaattttaacaccaatcaaaaaaatatgttgaaaagtgtgt 30650083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 18998202 - 18998098
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca-tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    |||||||||| |||| ||||||||| ||||||||| ||||||||||| | | ||  ||||||||||||| |||||||| | |||||||| ||||| ||||    
T  18998202 aagaggaatgctaacgacacacattttaacacacatttttcaacacactctctg--tggttaaaattcagatgggtcctatcaaatcatttgggtcccat 18998105  T
Q  244 ataaatt 250  Q
    || ||||    
T  18998104 atgaatt 18998098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 27072967 - 27072894
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||| ||| |||||||||||||||||||||   ||||||||||||||||||| |||| || ||||||||||    
T  27072967 caacacatattttaacacacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaat 27072894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 35586568 - 35586482
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||| |||| ||||| || ||||| |||||||||||||||||||||||   ||| |||| ||||||||||||| || ||||||||||    
T  35586568 agagaaatgttaacatcatacattctaacacacacttttcaacacattctctttaattgattaaaattcacataggacccaccaaat 35586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 8402483 - 8402538
Alignment:
Q  175 acacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||    
T  8402483 acacacttttcaacacactctttgattgtttaaaattcacatgggtcccaacaaat 8402538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 2171031 - 2171133
Alignment:
Q  202 gttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaag 300  Q
    ||||||||| ||||| ||||||||||| | |||| ||  ||||||||||| |||||| | ||   ||||||||||| ||||||||||||||||| ||| |    
T  2171031 gttaaaatttacatgtgtcccaccaaaattatgtcggacccatataaatttggtggggtccaagcgaattttaaccaattaaaaagagtgtgttaaaatg 2171130  T
Q  301 tgt 303  Q
    |||    
T  2171131 tgt 2171133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 2478534 - 2478469
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtggg 257  Q
    ||||| || |||||||||| ||||||||||||||||||||| || || |||||||| || ||||||    
T  2478534 ttttttatcggttaaaatttacatgggtcccaccaaatcatctgtgtcccatataattttggtggg 2478469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 30262874 - 30262769
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||| |||| | ||||||||||| | | |||||| ||||| || || ||||||||||| ||||||  |||| | |||||||||| || ||||||| |||    
T  30262874 ttttttattgatcaaaattcacatagattccaccacatcatttgagtaccatataaatttggtgggactcatataaattttaaccaataaaaaagaatgt 30262775  T
Q  292 gttgaa 297  Q
    ||||||    
T  30262774 gttgaa 30262769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 20271179 - 20271105
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatg 216  Q
    ||||| |||| || ||||||||||| |||||| ||||||||||||||   | ||||||| |||||||||||||||    
T  20271179 aagagaaatgttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatg 20271105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 21057807 - 21057733
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatg 216  Q
    ||||| |||| || ||||||||||| |||||| ||||||||||||||   | ||||||| |||||||||||||||    
T  21057807 aagagaaatgttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatg 21057733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 36009987 - 36009901
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||||| || ||||| ||||| ||||||||||||| |||||||   | |||| ||||||||||||||||||   ||||||||||    
T  36009987 agaggaatgctagcaacaaacattttaacacacactttccaacacactctctttggttggttaaaattcacatgacacccaccaaat 36009901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 30650093 - 30650025
Alignment:
Q  165 acattgtaacacacacttttcaacaca--tttttgattg--gttaaaattcacatgggtcccaccaaat 229  Q
    ||||| ||||||||||||||||||| |  ||||||||||  |||||||||||||||||  |||||||||    
T  30650093 acattttaacacacacttttcaacatatttttttgattggtgttaaaattcacatgggatccaccaaat 30650025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 4994305 - 4994253
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca-tttttgattggttaaaatt 210  Q
    ||||||||||| ||||||||| |||| |||||| | |||||||||||||||||    
T  4994305 caacacacattttaacacacaatttttaacacactctttgattggttaaaatt 4994253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 9814039 - 9814135
Alignment:
Q  154 gataacaacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaat 249  Q
    |||| ||||||||||| ||||| | | ||| ||||||  | ||||||| ||||||||||||| | ||||||| |||| |||||| || |||||||||    
T  9814039 gatagcaacacacattttaacatatattttccaacactctctttgatttgttaaaattcacacgtgtcccactaaataatgtggatttcatataaat 9814135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 23848240 - 23848319
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacac---atttttgattggttaaaattcacatgggtcccac 224  Q
    |||| |||| |||||||||||||| ||  ||||||||||||||||   || |||||||| |||||||||| ||||| |||||    
T  23848240 agagaaatgctaacaacacacatttta--acacacttttcaacacactatctttgattgattaaaattcatatgggacccac 23848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 23848346 - 23848302
Alignment:
Q  206 aaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||  |||||||||||||||||||||||| |||||| ||||    
T  23848346 aaattcatttgggtcccaccaaatcatgtgggtcccatatgaatt 23848302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 40694600 - 40694674
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatc 230  Q
    |||||||| || ||||||||| ||| ||||||| |   ||||||||||||||||| ||||| | |||||||||||    
T  40694600 caacacacgttttaacacacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatc 40694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 43042164 - 43042207
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    |||||||| ||||||||||||| || |||||||||||||||||||    
T  43042164 tttgattgattaaaattcacat-ggccccaccaaatcatgtgggt 43042207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 10056788 - 10056630
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||| |   ||| ||| |||||||| || ||||||||| ||||||||||||||| |||    
T  10056788 agaggaatgctaacaacacacattctaacacgcacttttcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtccca 10056689  T
Q  243 tataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagt 301  Q
    |||||| | |||||||| ||| |||||||| ||| || |||||||||||||||||||||    
T  10056688 tataaaattggtgggttccatgtgaattttgaccaatcaaaaagagtgtgttgaaaagt 10056630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 159 - 305
Target Start/End: Complemental strand, 12275890 - 12275741
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||||||||| ||||||||||||| ||||||| |   || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  12275890 caacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtg 12275791  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||  ||| ||| |||||||| ||| || ||||||||||| |||||||||    
T  12275790 ggtcccatgtgatttttaaccaattgaagagagtgtgttggaaagtgtgt 12275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 40134552 - 40134378
Alignment:
Q  143 ataagaggaatgataacaacacacattgtaacacacacttttcaacacatttt-tgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||||| || |||| |||||| ||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||| |||||||| ||    
T  40134552 ataagaggaatgctagcaacccacattttaacacacactttccaacacactctctgattggttaaaattcacatgggtcccaccaaattatgtgggtccc 40134453  T
Q  242 atataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttct 318  Q
    ||||||||| ||| |||  | | |||||||  ||| || ||| |||||||||| ||| |||||| ||||||||||||    
T  40134452 atataaatttggtaggtcccctgtgaattt--accaatcaaagagagtgtgttaaaatgtgtgttgctagcatttct 40134378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 145 - 321
Target Start/End: Complemental strand, 26863079 - 26862900
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||| || ||||||||||| ||| |||||||||||| || | |   ||| ||||||||||||||||||||||||||||||||||||||||| |     
T  26863079 aagaggaatgctagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcct 26862980  T
Q  242 atataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctcat 321  Q
    ||||||||  ||||  |  ||| |||||||||||| || ||  |||||||||| ||| |||||| | || ||||||||||    
T  26862979 atataaatatggtgaatcccatgtgaattttaaccaatcaaggagagtgtgttaaaatgtgtgttgataacatttctcat 26862900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 49107057 - 49106895
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||| ||||| ||||||||||||||||||||| |   |||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||| |||     
T  49107057 caacatacattctaacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcggg-accatataaatttggta 49106959  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    ||   ||| |||||||||| | || ||| || |||||||| ||||||||| |||| ||||||||    
T  49106958 ggacccatgtgaattttaatcaatcaaagagtgtgtgttggaaagtgtgttgctaacatttctc 49106895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 2276387 - 2276280
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaa 297  Q
    |||||||||||||||||||  ||||||||||| |||||||| || |||||||| |||||| | ||| |||||||||||| || ||| |||||||||||||    
T  2276387 attggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaa 2276288  T
Q  298 aagtgtgt 305  Q
    ||||||||    
T  2276287 aagtgtgt 2276280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 47497855 - 47497740
Alignment:
Q  156 taacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgg 252  Q
    |||||||||||||| ||||||||| ||||||| | |||||   ||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||| |    
T  47497855 taacaacacacattctaacacacatttttcaatatattttctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttg 47497756  T
Q  253 gtgggtttcatctgaa 268  Q
    |||||| |||| ||||    
T  47497755 gtgggtctcatttgaa 47497740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 3235675 - 3235562
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    |||||||||||||||||||||||||||||| ||| ||  |||||||| |||| |||||| | ||||| |||| |||||||||||| || ||| |||||||    
T  3235675 tttttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctcatgtgaattttaaccaatcaaagagagtgt 3235576  T
Q  292 gttgaaaagtgtgt 305  Q
     ||| |||||||||    
T  3235575 attggaaagtgtgt 3235562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 2276276 - 2276423
Alignment:
Q  171 taacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattgggtgggtttcatctg 266  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||||| |||||||||| | ||  |||  ||| || |||| |||||| ||||| ||    
T  2276276 taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacccacat-aatttggtgggattcatgtg 2276374  T
Q  267 aattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatt 315  Q
    |||||||||| |||||| | |||||||| ||| |||||| |||||||||    
T  2276375 aattttaaccaattaaagatagtgtgttaaaatgtgtgttgctagcatt 2276423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 24516581 - 24516678
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  |||| |  ||| |||||||||| | || ||||| |||||    
T  24516581 tttgattggttaaaattcacatgggtcccaccaaatcatgtggattccatctaaatttagtggatcccatgtgaattttaatcaatcaaaaaaagtgt 24516678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 640901 - 640985
Alignment:
Q  191 atttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaac 275  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||| ||| | | |||| |||||||||||    
T  640901 atttttgattggttaaaatttatatgggtcacaccaaatcatgtggattccatataaatttggtagatctcatgtgaattttaac 640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 11201293 - 11201445
Alignment:
Q  172 aacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtggg--tttcatctg 266  Q
    |||||||||||| ||||||| |   ||| ||| |||||||||||||||||||||||||||||| ||||||  |||||||||| | ||||  | |||| |     
T  11201293 aacacacactttccaacacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcatataaatttgatgggtctctcatata 11201392  T
Q  267 aattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatttctc 319  Q
    | |||||||| |||||| ||||||||||  ||  ||||| ||||| |||||||    
T  11201393 agttttaaccaattaaagagagtgtgttagaatatgtgttgctagtatttctc 11201445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 18802866 - 18802956
Alignment:
Q  195 ttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaa 285  Q
    |||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||  | || |  ||| |||||||||||| ||||||||    
T  18802866 ttgatttgttaaaattcacataggtcccaccaaataatgttggttccatataaatttcgcggatcccatatgaattttaaccaattaaaaa 18802956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 305
Target Start/End: Complemental strand, 5443690 - 5443533
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    ||||| || ||||||||||| ||||||||| ||||||||| |   | |||||||||||||||||||||| | | ||||||||| |||||| | |||||||    
T  5443690 gaatgctagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatagct-ccaccaaattatgtggatcccatata 5443592  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    | ||  ||||||   || |||||| |||||  | ||| ||| |||||||||||||||||    
T  5443591 acttttgtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgt 5443533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 7526234 - 7526151
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaac 275  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||  |||  |||||||||| |||||| | ||| |||||||||||    
T  7526234 tttttgattggttaaaatttacatgtgtctcaccaaatcatgctggtctcatataaatttggtgggatccatgtgaattttaac 7526151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 46074165 - 46074058
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaa 297  Q
    ||||||||||||||||||| |||||| ||||||| |||| | |||||||||||   |||||  ||| | |||||||| | |||||| | |||||||| ||    
T  46074165 attggttaaaattcacatgagtcccatcaaatcacgtggatcccatataaatttaatgggtcccatgtaaattttaatcgattaaagaaagtgtgttaaa 46074066  T
Q  298 aagtgtgt 305  Q
    ||||||||    
T  46074065 aagtgtgt 46074058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 3235538 - 3235705
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatata 246  Q
    |||| |||||||||||||| ||||||||||||| ||| |||   | ||||||||||||||||||||||| | |||| |||| | |  ||||  ||| ||     
T  3235538 aatgctaacaacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaatttacatgggacccacat- 3235636  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcatt 315  Q
    | |||||| ||   ||| |||||||||||| || ||||||||||||||| || |||||| |||||||||    
T  3235637 atttgggtcggacccatgtgaattttaaccaatcaaaaagagtgtgttggaatgtgtgttgctagcatt 3235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 305
Target Start/End: Complemental strand, 26647856 - 26647694
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacac---atttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||| || ||||| ||||| ||| ||||||||||||||||   ||||||||||||||| |||||||||  || | | ||||| | ||||||  |    
T  26647856 aagaggaatgctagcaacatacattctaatacacacttttcaacacactatttttgattggttagaattcacataagttctatcaaattacgtgggtctc 26647757  T
Q  242 atataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||| || | |  || |||| |||||||||||| || ||||||| | ||||||||| |||||    
T  26647756 atataattttgat-agtctcatgtgaattttaaccaatgaaaaagactatgttgaaaaatgtgt 26647694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 45200475 - 45200580
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||  |||||||| | |||||| |||||||||||||||| |  |||||||||| |||||   |||  |||||||||| | |||||||||||||| |    
T  45200475 tttgatttattaaaatttatatgggttccaccaaatcatgtggatctcatataaatttggtggacctcaaatgaattttaatcaattaaaaagagtgtat 45200574  T
Q  294 tgaaaa 299  Q
    ||||||    
T  45200575 tgaaaa 45200580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 316509 - 316351
Alignment:
Q  161 acacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtggg 257  Q
    |||| |||| ||||||||| |||||||||||||   ||||||||| ||||||  ||||| || |||| |||||| ||||||  |||| ||||| |||||     
T  316509 acacgcattttaacacacatttttcaacacattctctttgattggataaaatctacatgagttccactaaatcaagtgggtctcatacaaatttggtgga 316410  T
Q  258 tttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgtcgctagcattt 316  Q
      |||| |||||||||||| |   ||  ||||||||| ||| |||||| ||||||||||    
T  316409 actcatgtgaattttaaccaagataagtgagtgtgttaaaatgtgtgttgctagcattt 316351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 305
Target Start/End: Complemental strand, 5452735 - 5452578
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    ||||| || ||||||||||| ||||||||| ||||||||| |   | |||||||||||||||||||||| | | ||||| ||| |||||| | |||||||    
T  5452735 gaatgctagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatagct-ccacccaattatgtggatcccatata 5452637  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    | ||  ||||||   || |||||| |||||  | ||| ||| |||||||||||||||||    
T  5452636 acttttgtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgt 5452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 36992845 - 36992976
Alignment:
Q  192 tttttgattggtt-aaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtg 290  Q
    ||||||||||||| ||||||||||||  || |||||||||||||  || |||||| | || ||||||| |||| |||||| ||||  |||||| || |||    
T  36992845 tttttgattggtttaaaattcacatgaatctcaccaaatcatgtaagtcccatatgattttggtgggtctcatgtgaattctaacaaattaaagagcgtg 36992944  T
Q  291 tgttg--aaaagtgtgtcgctagcatttctca 320  Q
    |||||  ||| || ||| ||||||||||||||    
T  36992945 tgttggaaaatgtatgttgctagcatttctca 36992976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 18089816 - 18089753
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtggg 257  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||   ||||||||||| ||||||    
T  18089816 tttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtggg 18089753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 36129092 - 36129129
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  36129092 tttttgattggttaaaattcacatgagtcccaccaaat 36129129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 7017200 - 7017144
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||||||||||||  |||| ||||||| |||||| | |||||||||||    
T  7017200 tttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatt 7017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 7032558 - 7032502
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||||||||||||  |||| ||||||| |||||| | |||||||||||    
T  7032558 tttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatt 7032502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 29356942 - 29356998
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||||||||||||||||||||| ||||||| ||| |||| | |||||| ||||    
T  29356942 tttgattggttaaaattcacatgggttccaccaattcacgtggatcccatatgaatt 29356998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 31042126 - 31042184
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcaca 214  Q
    ||||||| ||| ||||||||||||||||| |||||   |||||||||||||||||||||    
T  31042126 caacacatattttaacacacacttttcaatacattatctttgattggttaaaattcaca 31042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 10056621 - 10056681
Alignment:
Q  170 gtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaa 227  Q
    |||||||| |||||||||||||   |||||||||||| |||||||||||||  ||||||||    
T  10056621 gtaacacatacttttcaacacactctttttgattggtcaaaattcacatggaacccaccaa 10056681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 24516704 - 24516646
Alignment:
Q  161 acacacattgtaacacacacttttcaacacattttt-gattggttaaaattcacatggg 218  Q
    ||||||||| ||||||||  |||||||||| ||||| ||||| ||||||||||||||||    
T  24516704 acacacattttaacacacttttttcaacactttttttgattgattaaaattcacatggg 24516646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 318
Target Start/End: Original strand, 42986237 - 42986358
Alignment:
Q  196 tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttg 295  Q
    |||||| |||||| ||||| | |||| ||||||||||||| |  |||| |||||| |||||| |  || |||||||||| | || ||||| | | |||||    
T  42986237 tgattgattaaaactcacacgagtcc-accaaatcatgtgagacccatttaaatttggtgggatctatgtgaattttaatcaataaaaaaaaatatgttg 42986335  T
Q  296 aaaagtgtgtcgctagcatttct 318  Q
    |||| ||||| ||||||||||||    
T  42986336 aaaaatgtgttgctagcatttct 42986358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 253661 - 253713
Alignment:
Q  171 taacacacacttttcaacacatttttgattggttaaaattcacatgggtcccac 224  Q
    |||||| |||||||||||||  |||| ||| |||||||||||||||||||||||    
T  253661 taacactcacttttcaacactctttt-atttgttaaaattcacatgggtcccac 253713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 40803294 - 40803223
Alignment:
Q  160 aacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa 228  Q
    |||||||||| ||||| |||||||| || |||   ||||| |||||||||||||||||||||  ||||||||    
T  40803294 aacacacattctaacatacactttttaaaacactattttttattggttaaaattcacatgggatccaccaaa 40803223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 7017182 - 7017241
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaa--gtgtgtcgctagcatttctcatt 322  Q
    |||||||||||| || ||| ||||||| |||||||  |||||| ||||||||||||||||    
T  7017182 tgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcatt 7017241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 7032540 - 7032599
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaa--gtgtgtcgctagcatttctcatt 322  Q
    |||||||||||| || ||| ||||||| |||||||  |||||| ||||||||||||||||    
T  7032540 tgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcatt 7032599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 49107001 - 49107041
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||||| || ||| |||||||||||||||||||||    
T  49107001 tgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 49107041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 36480870 - 36480710
Alignment:
Q  148 aggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccata 244  Q
    ||||||| || ||||||||||| |||||||||||||||||||   |   ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36480870 aggaatgctagcaacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccata 36480771  T
Q  245 taaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||| | |||||  ||| |||||||||||| || ||| ||||||||||| |||| ||||    
T  36480770 taaatttgttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgt 36480710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 29955010 - 29955174
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttc 240  Q
    ||||||||| | || ||||| | ||| ||| ||| |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  29955010 taagaggaaagctagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcc 29955109  T
Q  241 catataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    || ||||||| | ||| |  ||| |||||||||||  || || |||||||| |||||||||||||    
T  29955110 cacataaatttgatggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgt 29955174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 30004164 - 30004328
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttc 240  Q
    ||||||||| | || ||||| | ||| ||| ||| |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  30004164 taagaggaaagctagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcc 30004263  T
Q  241 catataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    || ||||||| | ||| |  ||| |||||||||||  || || |||||||| |||||||||||||    
T  30004264 cacataaatttgatggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgt 30004328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 19158680 - 19158788
Alignment:
Q  190 catttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagt 289  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||| |||||| ||||| |||||||||||  || |||||||||    
T  19158680 catttttgattggttaaaattcacatgagtcccactaaattatgtgggtttcatataaatttggtggg-ttcatatgaattttaactaatcaaaaagagt 19158778  T
Q  290 gtgttgaaaa 299  Q
    || |||||||    
T  19158779 gtattgaaaa 19158788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 3901659 - 3901566
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtg 235  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||    
T  3901659 taagaggaatgctaacaacatacatt-taacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 151 - 305
Target Start/End: Original strand, 32880976 - 32881133
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataa 247  Q
    |||| ||| |||||||||| || |||||| ||||||||| | | |   ||||||||||| ||||||||||||||||| ||||||||||| | ||||||||    
T  32880976 aatgctaagaacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataa 32881075  T
Q  248 attgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||| ||||||| || | | |||||||||| || ||||||| ||||||||||| |||||    
T  32881076 atttggtgggtctcgtgtaaattttaaccaataaaaaagattgtgttgaaaaatgtgt 32881133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 31205347 - 31205495
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    ||||| ||||||||||| || ||||||| | ||| ||||||| |   ||||||||||||||||| |||||||||  |||||||||||||||| |||||||    
T  31205347 gaatgctaacaacacacgttttaacacatattttccaacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatata 31205446  T
Q  247 aattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttg 295  Q
    || | ||||||| |||| |||||||| ||| || ||| |||||||||||    
T  31205447 aaattggtgggtctcatgtgaattttgaccaatcaaagagagtgtgttg 31205495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 19560602 - 19560765
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||| |||||||| ||||| |||| |||||||||||| ||| |   ||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  19560602 aagaggaatgctaacaacatacattctaacgcacacttttcaatacactcgctttgattggttgaaattcatatgggtcccaccaaatcatgtgggtccc 19560701  T
Q  242 atataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||| |||||  |||| |  | | ||  |||||||| || ||| ||||||||||||||| |||||    
T  19560702 atacaaatttagtggatcccttgtgctttttaaccaatcaaagagagtgtgttgaaaaatgtgt 19560765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 305
Target Start/End: Original strand, 37341203 - 37341359
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacaca-tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatat 245  Q
    |||||||| |||||||||||||| ||||||||  ||| |||||   ||||||||| |||||||||||||||||||| ||||||||||||||||  |||||    
T  37341203 gaggaatgttaacaacacacattttaacacac--tttccaacattctttttgattagttaaaattcacatgggtcc-accaaatcatgtgggtctcatat 37341299  T
Q  246 aaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||   |||||| ||| |||||||||||| || ||| | ||| ||||| |||||||||    
T  37341300 aaatttaatgggttacatgtgaattttaaccaatcaaataaagtatgttggaaagtgtgt 37341359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 14345257 - 14345160
Alignment:
Q  202 gttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||| ||||||| |||| || ||||||||| || ||| | |||||||||||||    
T  14345257 gttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaa 14345160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 35357431 - 35357326
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||||||| ||||||||||||  || ||||||||||| ||||| |  ||| ||| |||||||| || ||| |||||||||    
T  35357431 tttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatcaaagagagtgtgt 35357332  T
Q  294 tgaaaa 299  Q
    ||||||    
T  35357331 tgaaaa 35357326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 11532549 - 11532438
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||  |||||| |  | |||||||| ||| || ||||||||| |||    
T  11532549 tttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggtcttgtgtgaattttgaccaatcaaaaagagtatgt 11532450  T
Q  294 tgaaaagtgtgt 305  Q
    |  |||||||||    
T  11532449 tagaaagtgtgt 11532438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 51541397 - 51541254
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    |||||||| || ||||||| | ||||||| |||   ||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||  || ||||    
T  51541397 caacacaccttctaacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtg 51541298  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    |||  ||| ||| |||||||| || ||||| ||||| |||||||    
T  51541297 ggtcacatgtgagttttaaccaatcaaaaatagtgtattgaaaa 51541254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 40554067 - 40554190
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaa 297  Q
    |||| ||||||||||||||||||||||||||||||||| |  ||||||||||| | |||   |||| ||| |||||||| || ||| ||||||| |||||    
T  40554067 attgattaaaattcacatgggtcccaccaaatcatgtgagacccatataaatttgatggaactcatgtgagttttaaccaatcaaagagagtgtattgaa 40554166  T
Q  298 aa--gtgtgtcgctagcatttctc 319  Q
    ||  |||||| |||||||||||||    
T  40554167 aattgtgtgttgctagcatttctc 40554190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 45332657 - 45332557
Alignment:
Q  195 ttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgtt 294  Q
    ||||||| || ||||| |||||||||  |||||||||||||||| ||||||||||| ||||| || ||| |||||||||||| |||||| | ||||||||    
T  45332657 ttgattgttttaaatttacatgggtctgaccaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtgtgtt 45332558  T
Q  295 g 295  Q
    |    
T  45332557 g 45332557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 3901499 - 3901629
Alignment:
Q  172 aacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaa 268  Q
    |||||| | |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||     || ||  ||| ||||||   ||| ||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatgtg-----cacat-gatttggtgggacccatgtgaa 3901592  T
Q  269 ttttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||| || ||| |||||||||||||||||||||    
T  3901593 ttttaaccaatcaaagagagtgtgttgaaaagtgtgt 3901629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 36007516 - 36007387
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatata 246  Q
    ||||| || ||||||||||| |||||  ||||||||||||||||||   ||| ||||||||||||||||| | |||   ||||||||||||  |||||||    
T  36007516 gaatgttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtgggccccatata 36007417  T
Q  247 aattgggtgggtttcatctgaattttaacc 276  Q
    |||| ||||| |  ||| ||||||||||||    
T  36007416 aatttggtggatcccatatgaattttaacc 36007387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 19554359 - 19554467
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    ||||| |||| |||||||||||||| |||||| ||||  |||| |||   | |||||||| |||||||||| ||||||||||||||| ||||||||| ||    
T  19554359 aagagaaatgctaacaacacacattctaacacgcactggtcaatacaccctctttgattgattaaaattcatatgggtcccaccaaaccatgtgggtccc 19554458  T
Q  242 atataaatt 250  Q
    ||| |||||    
T  19554459 atacaaatt 19554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 36026955 - 36026863
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca-tttttgattggttaaaattcacatgggtcccaccaaatcatgtggg 237  Q
    ||||||||| |||||||||||||| |||||| |||||||||| ||| | |||||| |||||||||||| || | ||||  |||||||||||||    
T  36026955 agaggaatgttaacaacacacattttaacactcacttttcaatacactctttgatcggttaaaattcatatagatccccacaaatcatgtggg 36026863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 40117757 - 40117862
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaa 297  Q
    |||||||||||||||| ||  |||||||||||||||||||| |||  |||||| ||  ||   ||| |||||||||||| || || ||||||||||||||    
T  40117757 attggttaaaattcacgtg--tcccaccaaatcatgtgggtcccacttaaatttggcaggacccatttgaattttaaccaatgaataagagtgtgttgaa 40117854  T
Q  298 aagtgtgt 305  Q
    ||||||||    
T  40117855 aagtgtgt 40117862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 36480686 - 36480767
Alignment:
Q  151 aatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||| |||||||||||||| |||||||| |||| ||||||| |   ||||||||||||||||||||||||| |||| |||||    
T  36480686 aatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaat 36480767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 303
Target Start/End: Original strand, 16729149 - 16729307
Alignment:
Q  148 aggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccata 244  Q
    ||||||| ||| ||||||| || |||||| |||| ||||||| |   ||||||||| |||||||| |||||| ||||||||||||||| ||| | ||||     
T  16729149 aggaatgctaataacacacgttttaacacgcactcttcaacatactttttttgattagttaaaatgcacatgagtcccaccaaatcatatggatcccatt 16729248  T
Q  245 taaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    |||||| | || ||  ||| | ||| |||||| || ||||||| | || ||||||||||    
T  16729249 taaatttgatgagtcacatgtaaatgttaaccaataaaaaagaatatgctgaaaagtgt 16729307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 35415135 - 35415049
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa 228  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||| |   ||||| ||| |||||||||| ||| |||| |||||||    
T  35415135 aagagtaatgctaacaacacacattttaacacacacttttcaacatatacttttttatttgttaaaattcgcataggtcacaccaaa 35415049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 48240462 - 48240387
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaatt 270  Q
    |||||||  |||||||| |||||| ||| |||||||||||||||||||||||||||| | |||||| ||| ||||||    
T  48240462 tttgattacttaaaatttacatggatcc-accaaatcatgtgggttccatataaatttgatgggttccatgtgaatt 48240387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 4277118 - 4276977
Alignment:
Q  172 aacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtggg-----tttcat 263  Q
    |||||||| ||||||||||| |||   |||||| |||| ||| | ||||||| ||  ||||||||||||| ||||||||||| ||||||     | ||||    
T  4277118 aacacacatttttcaacacactttctttgattgattaatatttatatgggtctcattaaatcatgtgggtcccatataaatttggtgggtctcatgtcat 4277019  T
Q  264 ctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
     |||||||||| | || ||||||||| | |||||||||||||    
T  4277018 gtgaattttaatcaatcaaaaagagtatattgaaaagtgtgt 4276977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 299
Target Start/End: Original strand, 37189119 - 37189274
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaaca-catttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    ||||| ||||||||||||| ||||| ||||||||  |||||||||   ||||| ||| ||||||||   || |||||||||||||||||||| |  || |    
T  37189119 aagagaaatgataacaacatacattttaacacacgtttttcaacatttttttttattagttaaaatgtgcacgggtcccaccaaatcatgtgagacccgt 37189218  T
Q  244 ataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||| |||  ||||  ||||| |||||||||||| || ||| ||||| |||| ||||    
T  37189219 atagatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaa 37189274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 9145440 - 9145490
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||| |||||||||||||||||||||||||||||||| || || ||||||    
T  9145440 ttttttattggttaaaattcacatgggtcccaccaaatgatatgagttcca 9145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 40763473 - 40763391
Alignment:
Q  203 ttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaa 285  Q
    ||||||||||| || || |||||||||||||||| | ||||||||||| | ||| | |||| |||||||||||| || |||||    
T  40763473 ttaaaattcacctgagttccaccaaatcatgtggatcccatataaatttgatggatctcatgtgaattttaaccaataaaaaa 40763391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 35527172 - 35527127
Alignment:
Q  193 ttttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||    
T  35527172 tttttatttgttaaaattcacatggatcccaccaaatcatgtgggt 35527127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 1458698 - 1458628
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgg 217  Q
    ||||| |||||||||||||| ||||| |||||||||||||||   || |||||||||| ||||||| ||||    
T  1458698 gaatgctaacaacacacattctaacaaacacttttcaacacactcttcttgattggtttaaattcatatgg 1458628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 13777766 - 13777683
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaac 275  Q
    ||||||| | ||||||||||| ||| || |||||| |||| |||||||||||||||||| | ||  |||| | |||||||||||    
T  13777766 tttttgaattgttaaaattcatatgcgttccaccatatcacgtgggttccatataaattcgatgaatttcgtgtgaattttaac 13777683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 1753339 - 1753397
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||||||||| ||||| ||  || |||||||||||| | |||||||||||    
T  1753339 tttttgattggttaaaatttacatgagtttcatcaaatcatgtggttcccatataaatt 1753397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 30268084 - 30268146
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    |||||||| ||||||| |||||||||||||||||| |||||| |  ||| ||||||| |||||    
T  30268084 tttgattgtttaaaatccacatgggtcccaccaaaccatgtgagacccaaataaatttggtgg 30268146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 16993416 - 16993339
Alignment:
Q  160 aacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgg 236  Q
    |||||||||| ||| | ||||||| ||||||| | ||| ||||||||| | ||| |||| ||||||||||||||||||    
T  16993416 aacacacattctaatatacactttccaacacactctttaattggttaacagtcatatggatcccaccaaatcatgtgg 16993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 26986271 - 26986362
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    ||||| || ||||||| ||| ||||| | ||||||||||||||| |   ||||| |||||||||||||||||||| | ||||| || |||||    
T  26986271 gaatgttagcaacacatattttaacatatacttttcaacacattctccttgattagttaaaattcacatgggtcctatcaaattatatgggt 26986362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 31524094 - 31524131
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatca 231  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  31524094 tttgattggttaaaatttacatgggtcgcaccaaatca 31524131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 4304786 - 4304830
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggt 238  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||    
T  4304786 tttgatggattaaaattcacatggatcccaccaaatcatttgggt 4304830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 48543492 - 48543440
Alignment:
Q  198 attggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||||||||| ||| || ||||||| |||| | |||||||||||    
T  48543492 attggttaaaattcacatgagtctcatcaaatcacgtggatcccatataaatt 48543440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 53247855 - 53247791
Alignment:
Q  229 tcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||| |||||||| |  ||  ||||||| |||||||||||| ||||| ||||||||||    
T  53247855 tcatgtgggtttcatataaaattagtaagtttcatgtgaattttaaccaattaataagagtgtgt 53247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 31970260 - 31970123
Alignment:
Q  171 taacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctga 267  Q
    |||||||| ||||||||||||   ||||| |||| ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||  || |||    
T  31970260 taacacacgcttttcaacacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggttcaatgtga 31970161  T
Q  268 attttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||||||| || ||||||||||||||||||| |||||    
T  31970160 attttaaccaatcaaaaagagtgtgttgaaaaatgtgt 31970123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 38663639 - 38663803
Alignment:
Q  160 aacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    |||||||||| ||||||| | ||||||||||| |   |||||||||||| ||||||||| |||||||||||||||| ||||| | ||||||||| |||||    
T  38663639 aacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgg 38663738  T
Q  257 gtttcatctgaattttaacccattaaaaagagtgtgttgaaaa--gtgtgtcgctagcatttctc 319  Q
    ||  ||| |||||||||||| |||||||||||| |||||||||  | |||| |||||||||||||    
T  38663739 gtcccatgtgaattttaaccaattaaaaagagtatgttgaaaaatgcgtgttgctagcatttctc 38663803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 2542816 - 2542705
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||  |||| | |||||||||| || ||| |||||||||    
T  2542816 tttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgt 2542717  T
Q  294 tgaaaagtgtgt 305  Q
    |||||| |||||    
T  2542716 tgaaaaatgtgt 2542705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 49403457 - 49403602
Alignment:
Q  157 aacaacacacattgtaacacacacttttcaacacattttt---gattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattggg 253  Q
    ||||| ||| ||| ||||||||| |||| |||| ||||||   |||||||||||||||||||  |||||| ||||| |||||||||||||||||||| ||    
T  49403457 aacaatacatattctaacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccatataaatttgg 49403556  T
Q  254 tgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||||| |||| |||||||||||  || ||||| |||||||||||||    
T  49403557 tgggtctcatgtgaattttaacaaataaaaaaaagtgtgttgaaaa 49403602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 146 - 303
Target Start/End: Original strand, 7444255 - 7444415
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    |||| |||| || ||||||||||| ||||||||| |||||||||||||||   | || |||||||||||| |  | |||||||||||||||||||| |||    
T  7444255 agagaaatgctagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattcaaagagttcccaccaaatcatgtgggtccca 7444354  T
Q  243 tataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgt 303  Q
    |||||||| ||| |||  ||| ||||||||||| ||| ||| ||| |||||||||||||||    
T  7444355 tataaatttggtaggtcccatgtgaattttaactcatcaaagagaatgtgttgaaaagtgt 7444415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 34437623 - 34437730
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||   ||| |||||||||||| || ||| |||||||||    
T  34437623 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataatttggg-gggacccatgtgaattttaaccaatcaaagagagtgtgt 34437721  T
Q  294 tgaaaagtg 302  Q
    |||||||||    
T  34437722 tgaaaagtg 34437730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 159 - 321
Target Start/End: Complemental strand, 34437749 - 34437583
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||||||||| |||||| |||||||||||||| |   ||||||||||||||||||||||||||||| |||||| || ||||| ||| ||  ||| ||||    
T  34437749 caacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaattatatgggtcccacat-gatttggtg 34437651  T
Q  256 ggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa--gtgtgtcgctagcatttctcat 321  Q
    ||   ||| |||||||||||| || ||| ||||| |||||||||  |||||| ||||||||| |||||    
T  34437650 ggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgttgctagcattcctcat 34437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 45215332 - 45215463
Alignment:
Q  176 cacacttttcaacacattttt---gattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaatttt 272  Q
    ||||||||||||||||||||    ||||||||||||| |||||| ||||||||||||||||| || ||| |||||||| |||||   |||| ||||||||    
T  45215332 cacacttttcaacacattttcttagattggttaaaat-cacatgagtcccaccaaatcatgtaggatccgtataaatttggtggaactcatatgaatttt 45215430  T
Q  273 aacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    || | || ||||||| ||||| |||||||||||    
T  45215431 aatcaatcaaaaagaatgtgtcgaaaagtgtgt 45215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 45563091 - 45563201
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    |||||||||||||||| ||||||| |||||||||||||||| | |  |||||||||| ||||| | |||| | |||||||||| || ||| | |||||||    
T  45563091 tttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaaccgatcaaagaaagtgtgt 45563190  T
Q  294 tgaaaagtgtg 304  Q
    |||||||||||    
T  45563191 tgaaaagtgtg 45563201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 23317942 - 23318023
Alignment:
Q  202 gttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaa 283  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||  |||| | |||| |||||||||||| ||||||    
T  23317942 gttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaattaaa 23318023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 40668954 - 40669065
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||| ||||||||||| ||| |||| |||||||  ||||||||||| |||||    | | |||||||||||| || ||| |||||||||    
T  40668954 tttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgt 40669053  T
Q  294 tgaaaagtgtgt 305  Q
    ||||||||||||    
T  40669054 tgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 731446 - 731339
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||| ||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||  | |||| |||||||||| | || ||||  | |||    
T  731446 ttttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtgaatctcatgtgaattttaatcaatcaaaataaatgt 731347  T
Q  292 gttgaaaa 299  Q
    ||||||||    
T  731346 gttgaaaa 731339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 21281464 - 21281539
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt----tttgattggttaaaattcacatgggtcccaccaaatc 230  Q
    ||||||| ||| ||||| |||||||||||||||||    |||||||||||||||||||||| ||||||||||||||    
T  21281464 caacacatattttaacatacacttttcaacacattcttttttgattggttaaaattcacataggtcccaccaaatc 21281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 5695665 - 5695826
Alignment:
Q  159 caacacacattgtaacacacacttttcaacaca--tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    ||||||| ||| |||||||||||||||||||||  ||||| |||| |||||||||| ||| |  | ||||||||||| || | ||||||||||| | |||    
T  5695665 caacacatattttaacacacacttttcaacacattttttttattgtttaaaattcatatgag-actaccaaatcatg-ggatcccatataaatttgatgg 5695762  T
Q  257 gtttcatctgaattttaacccattaaaaagag--tgtgttgaaaagtgtgtcgctagcatttct 318  Q
    || |||| |||||||||| | || ||| ||||  |||||| ||| || ||||||||||||||||    
T  5695763 gtctcatatgaattttaaacaatcaaagagagtatgtgttaaaatgtatgtcgctagcatttct 5695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 40374150 - 40374054
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgt 291  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| | || ||   || |||||||||||| || ||| |||||||    
T  40374150 tttgattggttaaaattcacatggc-cccaccaaatcatgtgggtcccatataaatttgatgagtcctatgtgaattttaaccgatcaaagagagtgt 40374054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 305
Target Start/End: Complemental strand, 45925238 - 45925111
Alignment:
Q  181 ttttcaacacatttt---tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaaccc 277  Q
    |||||||||||||||   |||||| |||||||||| ||| ||| |||||||| |||||||| ||||||||||| | |||  | ||| | |||||||| |     
T  45925238 ttttcaacacattttctttgattgattaaaattcatatgagtctcaccaaattatgtgggtcccatataaatttgatggactccatatcaattttaatca 45925139  T
Q  278 attaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||| | ||||| |||||||||||||    
T  45925138 attaaataaagtgtattgaaaagtgtgt 45925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 49822692 - 49822607
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||| || ||||||| ||| ||||||||| ||||||||||| |   |||||||||||||||||||||||| ||||| |||||    
T  49822692 gaggaatgctagcaacacatattataacacacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 49822566 - 49822664
Alignment:
Q  208 attcacatgggtccc-accaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||||||||||||| ||||||| || ||||| || |||||||| | |||| | ||| |||||||||||| || ||| ||||||||||||||| |||||    
T  49822566 attcacatgggtccccaccaaattatatgggtcccgtataaatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgt 49822664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 7444446 - 7444360
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||| |||| || ||||||||||| ||||| |||||||||||||||||   ||||||  ||||||||||||||||| || |||||||    
T  7444446 agagaaatgttagcaacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacatgggacctaccaaat 7444360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 11120379 - 11120321
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    |||||||||| |||||||||||| || |||||||||||||||| |||| ||||| ||||    
T  11120379 tttttgattgattaaaattcacacggatcccaccaaatcatgttggtttcatattaatt 11120321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 15366474 - 15366542
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaatt 210  Q
    |||||||||| || ||||||||||| ||| ||||||||| |||||||   |||||||||||||||||||    
T  15366474 aagaggaatgctagcaacacacattctaagacacactttccaacacactctttttgattggttaaaatt 15366542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 40669097 - 40669008
Alignment:
Q  141 atataagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||| ||| |||| || ||||||||||| ||||||||  ||||||||||| |   ||||||||||||||||||||| |||| |||||||||    
T  40669097 atatatgagaaatgctagcaacacacattttaacacac--ttttcaacacactctctttgattggttaaaattcacacgggttccaccaaat 40669008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 315
Target Start/End: Original strand, 32543719 - 32543840
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||| |||||||||||  ||| |||||||||||||  ||  |  |||||||||| ||  || ||||| |||||||||||| |||||| ||||||||     
T  32543719 tttgattagttaaaattcatgtggatcccaccaaatcacatgtatcacatataaatttggcaggattcatgtgaattttaaccaattaaatagagtgtgg 32543818  T
Q  294 tgaaaagtgtgtcgctagcatt 315  Q
     |||| |||||| | |||||||    
T  32543819 cgaaatgtgtgttgatagcatt 32543840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 22336889 - 22336973
Alignment:
Q  163 acacattgtaacacacacttttcaacacatttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||| |||||||||  ||||||||| | |||||||||||||||||||||||| || || |||||||  ||| | |||||||||||    
T  22336889 acacattttaacacaca--tttcaacac-tctttgattggttaaaattcacatggatctcatcaaatcaattggatcccatataaatt 22336973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 31970119 - 31970256
Alignment:
Q  171 taacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa-tcatgtgggttccatataaattgggtgggtttcatctg 266  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||| |  ||||||||| | || ||||  ||| ||  ||| ||||||   ||| ||    
T  31970119 taacacacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacat-gatttggtgggacccatatg 31970217  T
Q  267 aattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    || ||||| | ||||||||||||||||||||||| ||||    
T  31970218 aaatttaatcaattaaaaagagtgtgttgaaaagcgtgt 31970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 16257672 - 16257603
Alignment:
Q  163 acacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||||| ||||||||| |||||||||||||   ||||||  ||||||||| ||||| ||||||||||||    
T  16257672 acacattttaacacacatttttcaacacattatttttgatatgttaaaattgacatgtgtcccaccaaat 16257603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 33422662 - 33422737
Alignment:
Q  200 tggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaac 275  Q
    ||||| ||||||| |||| | ||||||||| |||||||||||||| ||||| ||||||  || | |||||||||||    
T  33422662 tggttgaaattcatatggtttccaccaaattatgtgggttccatacaaatttggtgggactcgtatgaattttaac 33422737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 35752132 - 35752190
Alignment:
Q  259 ttcatctgaattttaacccattaaaaagagtgtgttgaaa--agtgtgtcgctagcatt 315  Q
    |||||||||||||||||| || ||||| ||||||||||||  ||||||| |||||||||    
T  35752132 ttcatctgaattttaaccaataaaaaatagtgtgttgaaaacagtgtgttgctagcatt 35752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 34783493 - 34783405
Alignment:
Q  165 acattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||| || ||||||||| |||||||| |   ||||||||||||||||||| |||| |||| ||||||||| |  || |||||||||||    
T  34783493 acattctagcacacacttctcaacacactatctttgattggttaaaattcatatggctcccgccaaatcattttagtcccatataaatt 34783405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 39131679 - 39131621
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||| |||||||||| | | ||||||||||| |||||| || ||||||||    
T  39131679 tttttgattggttgaaattcacatagttgccaccaaatcaagtgggtcccgtataaatt 39131621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 18075217 - 18075266
Alignment:
Q  222 caccaaatcatgtgggttccatataaattgggtgggtttcatctgaattt 271  Q
    ||||||||||||||||| ||||||||||| |||||| | ||| |||||||    
T  18075217 caccaaatcatgtgggtcccatataaatttggtgggatccatatgaattt 18075266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 38663767 - 38663730
Alignment:
Q  192 tttttgattggttaaaattcacatgggtcccaccaaat 229  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  38663767 tttttaattggttaaaattcacatgggacccaccaaat 38663730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 939359 - 939463
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgt 293  Q
    ||||||||||||||||||||||   || || ||||| |||||| | ||||||||||| |||| ||  ||| | |||||||||| || ||| | | |||||    
T  939359 tttgattggttaaaattcacataaatctcatcaaattatgtggatcccatataaatttggtgtgtcccatgtaaattttaaccaatcaaagataatgtgt 939458  T
Q  294 tgaaa 298  Q
    |||||    
T  939459 tgaaa 939463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 16661808 - 16661862
Alignment:
Q  165 acattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    ||||| ||||||||| |||||||||||||   |||||| ||||||||||||||||    
T  16661808 acattctaacacacatttttcaacacattctctttgatcggttaaaattcacatg 16661862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 38948086 - 38948228
Alignment:
Q  166 cattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttca 262  Q
    |||| ||||||||||||||||| |||   ||||| |||  |||||||| | | | ||| |||||||| || ||||| | |||||| || | |||||| ||    
T  38948086 cattttaacacacacttttcaatacattcttttttattaattaaaatttatacgagtctcaccaaattatatgggtccgatataattttgatgggttcca 38948185  T
Q  263 tctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    | |||||| ||||  || ||| |||||||||| ||||||||||    
T  38948186 tatgaattctaacaaatcaaagagagtgtgttaaaaagtgtgt 38948228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 39131588 - 39131616
Alignment:
Q  194 tttgattggttaaaattcacatgggtccc 222  Q
    |||||||||||||||||||||||||||||    
T  39131588 tttgattggttaaaattcacatgggtccc 39131616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 146 - 305
Target Start/End: Complemental strand, 12731719 - 12731557
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||||||| || ||||||| ||| ||||||||| ||| |||||||   ||||||||||||||||||| |||| | | |||||||||||||||||| |||    
T  12731719 agaggaatgctagcaacacatattataacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtccca 12731620  T
Q  243 tataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
     ||||||| | ||||| |||| |||||||||||| || ||| ||| |||||||| ||||||||    
T  12731619 aataaatttgatgggtctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 12731557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 3150231 - 3150295
Alignment:
Q  191 atttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3150231 atttttaattggttaaaattcacatgggtcccaccaaatcatgtggattccatataaatttggtg 3150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 28865383 - 28865484
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||| |||||||||| ||||||||| |||||||  |||| |   ||||| |||||||||||||||||||||||||||||| |||||||||| ||    
T  28865383 aagaggaatgctaacaacacatattgtaacatacactttctaacatacttttttttattggttaaaattcacatgggtcccaccaattcatgtgggtccc 28865482  T
Q  242 at 243  Q
    ||    
T  28865483 at 28865484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 1473593 - 1473689
Alignment:
Q  150 gaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccat 243  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||| |   |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  1473593 gaatgctagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 4033147 - 4032996
Alignment:
Q  156 taacaacacacattgtaacacacacttttcaacac---atttttgattggttaaaattcacatggg-----tcccaccaaatcatgtgggttccatataa 247  Q
    |||||||||||||| ||||||||||||||||| ||   || ||||||||||||||||||||| | |     || |||||||| |||||||| ||||||||    
T  4033147 taacaacacacattttaacacacacttttcaatacactatctttgattggttaaaattcacacgagtctcatctcaccaaattatgtgggtcccatataa 4033048  T
Q  248 attgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||| | ||| || ||| | ||||| |||| |||||| |||||||||||||||    
T  4033047 atttgatggattccatataaatttcaaccaattaaagagagtgtgttgaaaa 4032996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 6643429 - 6643367
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtgg 6643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 11650916 - 11650978
Alignment:
Q  196 tgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggt 258  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggt 11650978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 4483355 - 4483452
Alignment:
Q  159 caacacacattgtaacacacacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtg 255  Q
    ||||| ||||| ||||| ||||||||||||||  | ||||||||||||||||| | | ||||||||||||||||||||||  ||||||||||| ||||    
T  4483355 caacatacattttaacatacacttttcaacactctctttgattggttaaaattaatacgggtcccaccaaatcatgtgggacccatataaatttggtg 4483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 24783890 - 24784002
Alignment:
Q  193 ttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtg 292  Q
    |||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||| | ||| | |||| | |||||||| | || ||| | ||||||    
T  24783890 ttttgattcgttaaaattcatatggatcccaccaaatcatgtggattccatataaatttgatggatctcatgtaaattttaatcaatcaaagatagtgtg 24783989  T
Q  293 ttgaaaagtgtgt 305  Q
    || |||| |||||    
T  24783990 ttaaaaaatgtgt 24784002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 301
Target Start/End: Original strand, 5706595 - 5706751
Alignment:
Q  147 gaggaatgataacaacacacattgtaacacacacttttcaacacatttttg-attggttaaaattcacatgggtcccaccaaatcatgtgggttccatat 245  Q
    |||||||| || |||||||| || ||||||| || ||||||||  |||||  ||||||||||||||| |||| ||||||||||||||||| ||  |||||    
T  5706595 gaggaatgctagcaacacacgttctaacacatacatttcaacatttttttttattggttaaaattcatatggatcccaccaaatcatgtgcgtctcatat 5706694  T
Q  246 -aaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagt 301  Q
     || || | |||||  ||| | |||||||| | || ||| |||||||||||||||||    
T  5706695 caattttgatgggtcccatgtaaattttaatcaatcaaagagagtgtgttgaaaagt 5706751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 479968 - 479812
Alignment:
Q  145 aagaggaatgataacaacacacattgtaaca--cacacttttcaacacattt-ttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcc 241  Q
    |||||||||| || ||||||||||| |||||  ||||||||||||||||    || |||||| |||||||| | | ||| ||||||||||||||||  ||    
T  479968 aagaggaatgctagcaacacacattttaacatacacacttttcaacacacccctttattggtcaaaattcatacgagtctcaccaaatcatgtgggg-cc 479870  T
Q  242 atataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||||||||| |||||| |  || |||||||||||| || ||| | ||||| |||||||    
T  479869 atataaatttggtgggatcaatgtgaattttaaccaatcaaataaagtgttttgaaaa 479812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 26328282 - 26328213
Alignment:
Q  187 acacatttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgg 256  Q
    |||| ||||| |||| || |||||||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  26328282 acactttttttattgattgaaattcacatgggttccaccgaatcatgtgggtcccatataaatttggtgg 26328213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 12425017 - 12424939
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacacatttt--tgattggttaaaattcacatgggtccca 223  Q
    ||||||||| |||||||||||||| ||||  ||| ||||||||||||| |  ||||||||||| ||||||||||||||||    
T  12425017 agaggaatgctaacaacacacattttaacctaca-ttttcaacacattctcttgattggttaacattcacatgggtccca 12424939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 31946984 - 31946914
Alignment:
Q  145 aagaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattca 212  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||   ||||| || ||||||||||||    
T  31946984 aagaggaatgctagcaacacacattctaacacacacttttcaacacacacttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 5706784 - 5706699
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaa 228  Q
    |||| ||||||| ||||||||||| ||||||| |||||||||||||   | |||||||| |||||||| ||||||| |||| ||||    
T  5706784 agagaaatgatagcaacacacattttaacacatacttttcaacacactctctttgattgattaaaatttacatgggacccatcaaa 5706699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 294
Target Start/End: Complemental strand, 31945759 - 31945641
Alignment:
Q  177 acacttttcaacacatt-tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaac 275  Q
    ||||||| ||||||| | |||||||||||||||||||||   |||| || ||||||||||| | ||||||||||| |||| |  |||| |  ||| ||||    
T  31945759 acactttccaacacagtatttgattggttaaaattcacacaagtcctacaaaatcatgtggatcccatataaatttggtgagactcatgtatattataac 31945660  T
Q  276 ccattaaaaagagtgtgtt 294  Q
    | || ||||||||||||||    
T  31945659 caatcaaaaagagtgtgtt 31945641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 17600768 - 17600697
Alignment:
Q  148 aggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatg 216  Q
    ||||||| |||||||||||||| ||||| ||| ||||||||| |||   ||||||||||||||| |||||||    
T  17600768 aggaatgttaacaacacacattttaacaaacatttttcaacatattctctttgattggttaaaactcacatg 17600697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 9358244 - 9358299
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||| ||||||||||    
T  9358244 tttgattggttaaaattcacatgagacccactaaattatgtgggtt-catataaatt 9358299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 12731524 - 12731614
Alignment:
Q  142 tataagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaat 229  Q
    |||| ||| |||| || ||||||| ||| ||| |||||||| ||||||||||   ||||||||||||||||||||||| | |||| |||||    
T  12731524 tatacgagaaatgttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaat 12731614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 9645079 - 9645010
Alignment:
Q  149 ggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacat 215  Q
    |||||| || |||| |||||| ||||||| ||||| |||||||   ||||||||||||||||||||||||    
T  9645079 ggaatgctagcaacccacattctaacacatactttccaacacaatctttttgattggttaaaattcacat 9645010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 9651096 - 9651027
Alignment:
Q  149 ggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacat 215  Q
    |||||| || |||| |||||| ||||||| ||||| |||||||   ||||||||||||||||||||||||    
T  9651096 ggaatgctagcaacccacattctaacacatactttccaacacaatctttttgattggttaaaattcacat 9651027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 12424886 - 12424935
Alignment:
Q  165 acattgtaacacacacttttcaacaca--tttttgattggttaaaattca 212  Q
    ||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  12424886 acattttaacacacacttttcaacacactttttttattggttaaaattca 12424935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 3625142 - 3625183
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtg 235  Q
    |||||||  |||||||||||||| ||||||||||||||||||    
T  3625142 tttgattaattaaaattcacatgagtcccaccaaatcatgtg 3625183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 31946914 - 31946954
Alignment:
Q  265 tgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    |||||||||||| || |||||| ||||||||||||||||||    
T  31946914 tgaattttaaccgataaaaaagtgtgtgttgaaaagtgtgt 31946954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 31989248 - 31989192
Alignment:
Q  194 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggttccatataaatt 250  Q
    ||||||| ||||||||  |||||| ||||| |||||||||||||| | |||||||||    
T  31989248 tttgatttgttaaaatatacatggatcccaacaaatcatgtgggtccaatataaatt 31989192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 33182284 - 33182312
Alignment:
Q  201 ggttaaaattcacatgggtcccaccaaat 229  Q
    |||||||||||||||||||||||||||||    
T  33182284 ggttaaaattcacatgggtcccaccaaat 33182312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 136486 - 136353
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||||||| || ||| ||||||| ||||||||| |||||||||||   ||||||||||||||||| ||||||| |||||| ||||||||||| |  |||    
T  136486 agaggaatgctagcaatacacattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgaccca 136387  T
Q  243 tataaattgggtgggtttcatctgaattttaacc 276  Q
    |||||||| | ||||  |||| ||||||||||||    
T  136386 tataaatttgatgggactcatatgaattttaacc 136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 146 - 299
Target Start/End: Complemental strand, 201122 - 200967
Alignment:
Q  146 agaggaatgataacaacacacattgtaacacacacttttcaacaca---tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggttcca 242  Q
    ||||||||| |||||| ||||||| |||||||||||| ||||||||   | ||||||| ||||| ||||||||| ||||||| |||||| ||||| ||      
T  201122 agaggaatgctaacaatacacattttaacacacacttatcaacacactctctttgatttgttaagattcacatgtgtcccactaaatcaggtggg-tctg 201024  T
Q  243 tataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaa 299  Q
    ||| |||| |||||||   || |||||||||||| ||||| |||| |||||||||||    
T  201023 tatgaatttggtgggtccaatgtgaattttaaccaattaagaagaatgtgttgaaaa 200967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 200940 - 201018
Alignment:
Q  154 gataacaacacacattgtaacacacacttttcaacacatttttg---attggttaaaattcacatgggtcccaccaaat 229  Q
    |||||| ||| ||||| ||||||| | ||||||||||||| ||    |||||||||||||||||| || ||||||||||    
T  200940 gataactacaaacattttaacacatatttttcaacacattcttcttaattggttaaaattcacattggacccaccaaat 201018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 8346 - 8251
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacacatt---tttgattggttaaaattcacatgggtcccaccaaatcatgtggg 237  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||| ||||   ||||||||| |||||||||||||  ||||||||||| |||||||    
T  8346 taagaggaatgctaacaacatacatt-taacacacacttttcaacgcattctttttgattggctaaaattcacatgaatcccaccaaattatgtggg 8251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 8228 - 8316
Alignment:
Q  216 gggtcccaccaaatcatgtgggttccatataaattgggtgggtttcatctgaattttaacccattaaaaagagtgtgttgaaaagtgtgt 305  Q
    ||||||||||||||||||||||| ||| |||| |||| |||| ||||| ||||||||| || || ||||||| || ||||||||||||||    
T  8228 gggtcccaccaaatcatgtgggtcccacataatttgg-tgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgt 8316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 39193 - 39282
Alignment:
Q  144 taagaggaatgataacaacacacattgtaacacacacttttcaacac--atttttgattggttaaaattcacatgggtcccaccaaatcat 232  Q
    ||||||||||| ||| |||||||||| ||| | | | ||||||||||  || |||||||| ||||||||||||| ||||| ||||||||||    
T  39193 taagaggaatgctaataacacacattttaatatatatttttcaacacatatctttgattgattaaaattcacat-ggtcctaccaaatcat 39282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University