View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_13 (Length: 583)
Name: NF2158_high_13
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 25335782 - 25336332
Alignment:
| Q |
19 |
ggatttaccttgttgaaaacagaatttggcacaaaccataaagaaaaacagagtttagcactaggaaacaaagatgtatggtgtgggtcatgcatggaaa |
118 |
Q |
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| T |
25335782 |
ggatttaccatgttgaaaacagaatttggcacaaaccataaagaaaaacagagtttagcactaggaaacaaagatgtatggtgtgggtcatgcatggaaa |
25335881 |
T |
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| Q |
119 |
cattacttgttttataaatctcagagaaataaatacattatattatgccatcttatannnnnnnnaaagaggccaaatgtgatatatattaacttatatc |
218 |
Q |
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| T |
25335882 |
cattacttgttttataaatctcagagaaataaatacattatattatgtcatcttatatttttttttaagaggccaaatgtgatatatattaacttatatc |
25335981 |
T |
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| Q |
219 |
atcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaacaaattctcactcattcctcaaaagtgata |
318 |
Q |
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| T |
25335982 |
atcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaacaaattctcactcattcctcaaaagtgata |
25336081 |
T |
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| Q |
319 |
gaattgtctaaaaaatgttatatgacaaatcactacatcatgtatacaaacaaaatcatattccaatacaattaaattcatctaagtttgtatctcatgc |
418 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
25336082 |
gaattgtctaaaaaatgttattt----aatcactacatcatgtatacaaacaaaatcatattgcaatacaattaaattcagctaagtttgtatctcatgc |
25336177 |
T |
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| Q |
419 |
taagtttcaagtacattaaaaccgtgtatctcacctactatcaatcacatacgcaattcaaccttaaccatatatttctattttagaaacgtgccacttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25336178 |
taagtttcaagtacattaaaaccgtgtatctcacctactatcaatcacatacgcaattcaaccttaaccatatatttctattttagaaacgtgccacttt |
25336277 |
T |
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| Q |
519 |
tagtcttttctttcttcatgttaaattagcccaattatgtcaacttttgcctatg |
573 |
Q |
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| T |
25336278 |
tagtcttttctttcttcatgttaaattagcccaattatgtcaacttttgcttatg |
25336332 |
T |
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