View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_2 (Length: 996)
Name: NF2158_high_2
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 536 - 982
Target Start/End: Complemental strand, 40716536 - 40716095
Alignment:
| Q |
536 |
tataatattcaccatctgttaacttatcaactatcaacaactttcttcgatcatagtctaactagagatttcaatttaattaaaatccaattatctcaag |
635 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40716536 |
tataatattcactatctgttaacttatcacctattaacaactttctccgatcatagtctaaccagagatttcaatttaattaaaatccaattatctcaag |
40716437 |
T |
|
| Q |
636 |
agattattttgaggcagttatcattctcaagagattaatcactagaagttgaatgcagagatatataacattattcaaaagnnnnnnnngattgcatgac |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
40716436 |
agattattttgaggcagttatcattctcaagagattaatcactagaag--gaatgtaga---atataacattattcaaaagaaaaaaaagattgcatgac |
40716342 |
T |
|
| Q |
736 |
atagtcctccctactaatgttgtgagcataacacaacaagaaacggcgcgtgaactcaaagaaaatcctatatattaaggaaagaggacatatgtcctaa |
835 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40716341 |
atagtcctccctactaatgttgtgagcataacacaacaagaaacggcgcgtgaactcaaagaaaatcctatatattaaggaaagaggacatatgtcctaa |
40716242 |
T |
|
| Q |
836 |
ccaaaccaagctgatttccttggaccaaccaaactctcaaccgcctggacggacaaccttaccttctttgtctcattttcttgtcaaaaccttcttactt |
935 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40716241 |
ccaaaccaagctgatttccttggaccaaccaaactctcaaccgcttggacggacaaccttaccttctttgtctcattttcttgtcaaaaccttcttactt |
40716142 |
T |
|
| Q |
936 |
tgctttctttcttcattcactcaccnnnnnnngtgtaacgttatgat |
982 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40716141 |
tgctttctttcttcattcactcacctttttttgtgtaacgttatgat |
40716095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 111 - 317
Target Start/End: Complemental strand, 40716878 - 40716670
Alignment:
| Q |
111 |
gtttaaccagtaatttattacatatgagtgaatttaatacatgattccgtggttatttagttaatgggagtagtgatgagtgattttgcttcacaac--a |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40716878 |
gtttagccagtaatttattacatatgagttaatttaatacatgattccgtggttatttagttaatgggagtagtgatgagtgattttgcttcacaactga |
40716779 |
T |
|
| Q |
209 |
attgattgatatggagacaaaaaatatttgagagtgccggcatcattgaaattgaaagacaaagatatcatatcacacaaatatagtaagacataacata |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40716778 |
attgattgatatggagacacaaaatatttgagagtgccggcatcattgaaattgaaagacaaagatatcatatcacacaaatatagtaagacataacata |
40716679 |
T |
|
| Q |
309 |
agtgatagt |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
40716678 |
agtgatagt |
40716670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 28756533 - 28756478
Alignment:
| Q |
48 |
cactcattatgctaaaatcttaaggcattcaataatatattttattttagcttctt |
103 |
Q |
| |
|
||||| || |||| ||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
28756533 |
cactccttgtgctgaaatcttcaggcattcagtaatatatttcattttagcttctt |
28756478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 40716591 - 40716534
Alignment:
| Q |
471 |
cggtaagttcaacaattaatttcatca--aatcatacaaattcaattcgttaagttat |
526 |
Q |
| |
|
|||||||||||| || |||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
40716591 |
cggtaagttcaataactaattttatcatcaatcatacaaattcaattcgctaagttat |
40716534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 7901003 - 7900954
Alignment:
| Q |
54 |
ttatgctaaaatcttaaggcattcaataatatattttattttagcttctt |
103 |
Q |
| |
|
||||||| ||||||| |||| |||| |||||||||| ||||||||||||| |
|
|
| T |
7901003 |
ttatgctgaaatcttcaggctttcagtaatatatttcattttagcttctt |
7900954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University