View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_21 (Length: 525)
Name: NF2158_high_21
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 178 - 335
Target Start/End: Original strand, 1847435 - 1847592
Alignment:
| Q |
178 |
gtgcgtactctgaattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaaataaaaacaaaggaataaattcacctttgaaggaag |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847435 |
gtgcgtactctgaattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaaataaaaacaaaggaataaattcacctttgaaggaag |
1847534 |
T |
|
| Q |
278 |
ctgcgatgaaatcgtaaccacacgcaaggaagatgaagatggtagagaagaagagtag |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847535 |
ctgcgatgaaatcgtaaccacacgcaaggaagatgaagatggtagagaagaagagtag |
1847592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 398 - 515
Target Start/End: Original strand, 1847657 - 1847774
Alignment:
| Q |
398 |
acggtagagtagaagagtggttaaagaaagaatagacattagacaggatttttatggtgcagcttcggttaccgtcgaaaagggattaaaaaacaaaacc |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847657 |
acggtagagtagaagagtggttaaagaaagaatagacattaaacaggatttttatggtgcagcttcggttaccgtcgaaaagggattaaaaaacaaaacc |
1847756 |
T |
|
| Q |
498 |
gtacggaattgccctttg |
515 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1847757 |
gtacggaattgccctttg |
1847774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 1847277 - 1847354
Alignment:
| Q |
20 |
taacatgacttgggcacatattaacatttcacataatataataggaaaagctacttaggacagaagaagtaataaccc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1847277 |
taacatgacttgggcacatattaacatttcacataatataataggaaaagctacttaggacggaagaagtaataaccc |
1847354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 7890135 - 7890084
Alignment:
| Q |
190 |
aattgtgtgaaaaacgtacgaattggtgatattgatgacaagaatacatgaa |
241 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
7890135 |
aattgtgcgaaaaacctacgaatcggtgatactgatgataagaatacatgaa |
7890084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University