View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_27 (Length: 498)
Name: NF2158_high_27
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Complemental strand, 33139377 - 33138921
Alignment:
| Q |
20 |
gataacccaatatacatcaactgggaattgttccaaagctggtgcaagagctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatg |
119 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33139377 |
gataacccaatatacatcaacagggaattgttccaaagctggtgcaagggctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatg |
33139278 |
T |
|
| Q |
120 |
atgatttcaatgacttgccaagttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcaatgcttccggctttgaaagttgaggaa |
219 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33139277 |
atgatttcaatgacttgccatgttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcaatgcttccggctttgaaagttgaggaa |
33139178 |
T |
|
| Q |
220 |
ctctcttgattatgcctagtgatttggcgagtggttctgttcgtagattctgtgacaatagccagaaatctccatactcaagagcaaaagcagaaagagt |
319 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
33139177 |
ctctcttgattatgcctagtgatttggcaagtggttctgttggtagattctgtgataacagccagaactctccatactcaagggaaaaagcagaaagagt |
33139078 |
T |
|
| Q |
320 |
aagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttgttttgtaagctatttcctcacctggtgccttgcatgacatc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
33139077 |
aagcactccttttgcaacccatgaatagtttgacagcttttttaggattgctagtgttgttttgtatgctatttcctcacctggtgctttgcatgacatc |
33138978 |
T |
|
| Q |
420 |
tgccatcattatacaatataaatgtactattagttattttatactataaagtttaaataa |
479 |
Q |
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|||||| | ||| |||||||||| ||| |||||||||| ||||||||||||| |||| |
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| T |
33138977 |
tgccatattcataaaatataaatg---tatcagttattttaaactataaagtttacataa |
33138921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 33180617 - 33180200
Alignment:
| Q |
20 |
gataacccaatatacatcaactgggaattgttccaaagctggtgcaagagctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||||| |
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|
| T |
33180617 |
gataacccaatatacatcaactgggaattgctccaaagctggagcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatg |
33180518 |
T |
|
| Q |
120 |
atgatttcaatgacttgccaagttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcaatgcttccggctttgaaagttgaggaa |
219 |
Q |
| |
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||||| ||||| |||||||| ||||| ||||||| |||||| | |||||||||| ||| ||| |||||||| | | ||| || || | |||||||| | |
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| T |
33180517 |
atgatatcaatcacttgccatgttgctttgatcagattgttaacctccaaaattgcatagcggtgttttttgagcgattcaggtttggtgagttgaggca |
33180418 |
T |
|
| Q |
220 |
ctctcttgattatgcctagtgatttggcgagtggttctgttcgtagattctgtgacaatagccagaaatctccatactcaagagcaaaagcagaaagagt |
319 |
Q |
| |
|
||||||| |||||| | | |||||||| |||||||||||| |||||| |||||| | |||||||| || ||||| ||||||||||||||||||||||| |
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| T |
33180417 |
ctctcttcattatggccaaagatttggcaagtggttctgttggtagatactgtgatagcagccagaagtcaccatattcaagagcaaaagcagaaagagt |
33180318 |
T |
|
| Q |
320 |
aagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttgttttgtaagctatttcctcacctggtgccttgcatgacatc |
419 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| || | |||||||| |||||||||||| || |||||||||||||| |||||||||| |||| |
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| T |
33180317 |
gagaactccttttgcaacccatgaatagtttgacagcttgttcaagattgctagtgttgttttgtatgcaatttcctcacctggagccttgcatgccatc |
33180218 |
T |
|
| Q |
420 |
tgccatcattatacaata |
437 |
Q |
| |
|
||||| ||| |||||||| |
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|
| T |
33180217 |
tgccaccatcatacaata |
33180200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 33289481 - 33289883
Alignment:
| Q |
20 |
gataacccaatatacatcaactgggaattgttccaaagctggtgcaagagctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatg |
119 |
Q |
| |
|
|||||||||| | |||||||| ||||||| |||||| ||| ||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
33289481 |
gataacccaaaacacatcaaccgggaattcttccaatgctagtgcaagagctggcactttcttgatgtcatgaagtgagttgagtctttccaactcaatg |
33289580 |
T |
|
| Q |
120 |
atgatttcaatgacttgccaagttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcaatgcttccggctttgaaagttgaggaa |
219 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || | |||||||| | |
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|
| T |
33289581 |
atgatttcaatcactttccatgttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcagtgcttcagttttggtgagttgaggca |
33289680 |
T |
|
| Q |
220 |
ctctcttgattatgcctagtgatttggcgagtggttctgttcgtagattctgtgacaatagccagaaatctccatactcaagagcaaaagcagaaagagt |
319 |
Q |
| |
|
|||| || |||||| ||| ||||||||| |||||||||||| |||||| ||||| | |||||| || ||||| |||| |||||||||||||||||| |
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|
| T |
33289681 |
ctcttttcattatggctaatgatttggcaagtggttctgttggtagatgttgtgatagattccagaactcaccatattcaatagcaaaagcagaaagagt |
33289780 |
T |
|
| Q |
320 |
aagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttgttttgtaagctatttcctcacctggtgccttgcatgacatc |
419 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||| | |||||| ||||||| || |||||||| |||||| |||| |||||| || ||||||||||||||| |
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|
| T |
33289781 |
tagcactcctttttcaacccataaattgtttgagagctttttcaggattgttagtgttgtttcgtaagcaattttctcacccggagccttgcatgacatc |
33289880 |
T |
|
| Q |
420 |
tgc |
422 |
Q |
| |
|
||| |
|
|
| T |
33289881 |
tgc |
33289883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 33157802 - 33157385
Alignment:
| Q |
20 |
gataacccaatatacatcaactgggaattgttccaaagctggtgcaagagctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatg |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
33157802 |
gataacccaatagacatcaactgggaattgctccaaagctggagcaagagctggcacttccttgatatcatgacgcgagttgagtctttccaacgcaatg |
33157703 |
T |
|
| Q |
120 |
atgatttcaatgacttgccaagttgccttgatcaaattgttgagctccaaaatttcattgcgatgttttttcaatgcttccggctttgaaagttgaggaa |
219 |
Q |
| |
|
||||| ||||| | |||| | ||||||||||||| |||||| | |||||||| | ||| ||| |||||||| | ||| || || | |||||||| | |
|
|
| T |
33157702 |
atgatatcaatcagttgcgatgttgccttgatcagattgttaacctccaaaactgcatagcggtgttttttgagcaattcaggtttggtgagttgaggta |
33157603 |
T |
|
| Q |
220 |
ctctcttgattatgcctagtgatttggcgagtggttctgttcgtagattctgtgacaatagccagaaatctccatactcaagagcaaaagcagaaagagt |
319 |
Q |
| |
|
||||||| || ||| ||| ||||||||| |||||||||||| |||||| |||||| | ||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
33157602 |
ctctcttcataatggctaatgatttggcaagtggttctgttggtagatactgtgatagcagccaaaactctccatactcaagagcaaaagcagaaagagt |
33157503 |
T |
|
| Q |
320 |
aagcactccttttgcaacccatgaatagtttgacaacttttttaggattgctaatgttgttttgtaagctatttcctcacctggtgccttgcatgacatc |
419 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| ||| || |||||||||| ||||||| |||| || |||||||||||||| |||||||||| |||| |
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|
| T |
33157502 |
gagaactccttttgcaacccatgagtagtttgacagcttgttcaggattgctagtgttgttctgtatgcaatttcctcacctggggccttgcatgccatc |
33157403 |
T |
|
| Q |
420 |
tgccatcattatacaata |
437 |
Q |
| |
|
| | | |||||||||||| |
|
|
| T |
33157402 |
tacaaccattatacaata |
33157385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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