View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_28 (Length: 481)
Name: NF2158_high_28
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 41878855 - 41878405
Alignment:
| Q |
20 |
caatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctccacatgtttgattgtgtctatgttgtgtgtgtt |
119 |
Q |
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| T |
41878855 |
caatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctccacatgtttgattgtgtctatgttgtgtgtgtt |
41878756 |
T |
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| Q |
120 |
gagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttctcgtcgattggcttcattgttgct |
219 |
Q |
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| T |
41878755 |
tagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttctcgtcgattggcttcattgctgct |
41878656 |
T |
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| Q |
220 |
tgctacaaagaaagtt-atttatgtttatgatgtatgtcataaaatacaaagtgtaaggtggtttttatttataggaggtttatacaatacaaagttaga |
318 |
Q |
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| T |
41878655 |
tgctacaaagaaagtttatttatgtttatgatgtatgttatacaatacaaagtgcaaggtggtttttatttataggaggtttatacaatacaaagttaga |
41878556 |
T |
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| Q |
319 |
atgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcactgtcacgtgtaagtaataagattg |
418 |
Q |
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| T |
41878555 |
atgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcactgtcacgtgtaagtaataagattg |
41878456 |
T |
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| Q |
419 |
atcatattaattaacatgttcattcattttctacacactatttgggtcttc |
469 |
Q |
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| T |
41878455 |
atcatattaattaacatgttcattcattttctacacactatttgggtcttc |
41878405 |
T |
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