View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_29 (Length: 469)
Name: NF2158_high_29
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 2280599 - 2281041
Alignment:
| Q |
19 |
agcaagtacgaaactactctttgacaagaagattgggaagacaaatggagcaaatcaaaaggaatgactgattgactaagctagatgaagaatttattag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2280599 |
agcaagtacgaaactactctttgacaagaagattgggaagacaaatagagcaaatcaaaaggaatgactgattgactaagttagatgaagaatttattag |
2280698 |
T |
|
| Q |
119 |
ttaaacccatattcattcattcattttttgatgaatccggcatggaggaagtgacagtgggatttatcgtcggggttgaaaatcaactatcacaaaagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2280699 |
ttaaacccatattcattcattcattttttgatgaattcggcatggaggaagtgacagtgggatttatcgtcggggttgaaaatcaattatcacaaaagtt |
2280798 |
T |
|
| Q |
219 |
cgttgatggcatcaatgttattagagattttatggaagcggcgtgtcattttttacattgtagtgagggatccattcctttcaaatatttggggttgccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280799 |
cgttgatggcatcaatgttattagagattttatggaagcagcgtgtcattttttacattgtagtgagggatccattcctttcaaatatttggggttgccg |
2280898 |
T |
|
| Q |
319 |
gtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaattgaagaaaagacttaactcttgggggaataagtacgtgagccttggag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280899 |
gtaggagctaattctagaaagttgtctacatgggagcctttgttggagcaattgaagaaaagacttaactcttgggggaataagtacgtgagccttggag |
2280998 |
T |
|
| Q |
416 |
gtcgaattgttctcttgaattccgttttaaatgctatacctat |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280999 |
gtcgaattgttctcttgaattccgttttaaatgctatacctat |
2281041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 186 - 458
Target Start/End: Original strand, 50435392 - 50435668
Alignment:
| Q |
186 |
cgtcggggttgaaaatcaactatcacaaaagttcgttgat-ggcatcaatgttattagagattttatggaagcggcgtgtcattttttacattgtagtga |
284 |
Q |
| |
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||||||||||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
50435392 |
cgtcggggttgaagattaattatcacaaaagctctttgattgggatcaatgtaaatagagattttatggaagcggcgtgtcactttttacattgtagaga |
50435491 |
T |
|
| Q |
285 |
gggatccattcctttcaaatatttggggttgccggtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaattgaagaaaagactt |
381 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| || ||||||||| ||||| ||||||||||||||||| |
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| T |
50435492 |
gggttccattcctttcaaatatttggggttgccggtaggtgtcaatcctagaaagttgtcaacttgggagcctatgttggaccaattgaagaaaagactc |
50435591 |
T |
|
| Q |
382 |
aactcttgggggaataagtacgtgagccttggaggtcgaattgttctcttgaattccgttttaaatgctatacctat |
458 |
Q |
| |
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|| || | |||||| | ||| ||||| || |||||| ||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
50435592 |
aattcgtaggggaacatgtatgtgagtctcggaggtagaattgttctcttgaattccgttctaaatgctattcctat |
50435668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 42112397 - 42112348
Alignment:
| Q |
367 |
ttgaagaaaagacttaactcttgggggaataagtacgtgagccttggagg |
416 |
Q |
| |
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||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |
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| T |
42112397 |
ttgaagaaaaggcttaattcttggggaaataagtatgtgagtcttggagg |
42112348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 446
Target Start/End: Complemental strand, 32775663 - 32775401
Alignment:
| Q |
188 |
tcggggttgaaaatcaactatcacaaaagttcgttgat-ggcatcaatgttattagagattttatggaagcggcgtgtcattttttacattgtagtgagg |
286 |
Q |
| |
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|||||||||||| | |||| || ||| ||||||| || || ||||| |||| |||||| |||||||| |||||||| | || ||||||||| |||| |
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| T |
32775663 |
tcggggttgaaagttaacttccataaatgttcgttaattggtatcaacgttaatagagactttatggaggcggcgtgccgattcttacattgtcaagagg |
32775564 |
T |
|
| Q |
287 |
gatccattcctttcaaatatttggggttgccggtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaattgaagaaaagacttaa |
383 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||| ||||| |||||||||||| |||| || |
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| T |
32775563 |
aagcaattcctttcaaatatttggggttgccggtaggagccaattcaaggaagttgtcaacttgggagcctttgttggatcaattgaagaaacgactcaa |
32775464 |
T |
|
| Q |
384 |
ctcttgggggaataagtacgtgagccttggaggtcgaattgttctcttgaattccgttttaaa |
446 |
Q |
| |
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|| ||||| ||||| || ||||| || |||||| ||||||||| ||||||||| ||||||| |
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| T |
32775463 |
ttcatggggaaataaatatgtgagtctaggaggtataattgttcttttgaattccattttaaa |
32775401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 458
Target Start/End: Original strand, 36987706 - 36987872
Alignment:
| Q |
295 |
cctttcaaatatttggggttgccggtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaattgaagaaaagacttaactcttggg |
391 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||| | ||||| ||||||||||| | ||| || || |||| |
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| T |
36987706 |
cctttcaaatacttgggtttgccggttggagctaattctaggaagttgtctacttgggagcttatgttggatcaattgaagaataaactaaattcatggg |
36987805 |
T |
|
| Q |
392 |
ggaataagtacgtgagccttggaggtcgaattgttctcttgaattccgttttaaatgctatacctat |
458 |
Q |
| |
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| ||||| || ||||| ||||||||| ||||||| || || || |||||||||||||| |||||||| |
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| T |
36987806 |
gaaataaatatgtgagtcttggaggtagaattgtgcttttaaactccgttttaaatgcaatacctat |
36987872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 3679617 - 3679573
Alignment:
| Q |
373 |
aaaagacttaactcttgggggaataagtacgtgagccttggaggt |
417 |
Q |
| |
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||||||||||| |||||||| |||||||| ||||| ||||||||| |
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| T |
3679617 |
aaaagacttaattcttggggtaataagtatgtgagtcttggaggt |
3679573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 458
Target Start/End: Original strand, 42939852 - 42940042
Alignment:
| Q |
271 |
ttacattgtagtgagggatccattcctttcaaatatttggggttgccggtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaat |
367 |
Q |
| |
|
||||||||||| || || |||||||||||| ||||||||||||||||| ||||||| ||| | ||| |||| || ||||||||| |||||||||| |
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|
| T |
42939852 |
ttacattgtagagaaggtgtcattcctttcaagtatttggggttgccggttggagctagttcgaagaaggtgtcaacttgggagcctatgttggagcaat |
42939951 |
T |
|
| Q |
368 |
tgaagaaaagacttaactcttgggggaataagtacgtgagccttggaggtcgaattgttctcttgaattccgttttaaatgctatacctat |
458 |
Q |
| |
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||| ||| ||||| || || |||||||| || | ||||| || |||||||||||||| || | |||||| |||||||||| || ||||| |
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| T |
42939952 |
tgaggaagagactaaattcgtgggggaacaaatttgtgagtctaggaggtcgaattgtccttctaaattccattttaaatgccattcctat |
42940042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 448
Target Start/End: Complemental strand, 30504409 - 30504274
Alignment:
| Q |
316 |
ccggtaggagctaattctagaaagttgtctacatgggagcct---ttggagcaattgaagaaaagacttaactcttgggggaataagtacgtgagccttg |
412 |
Q |
| |
|
||||| ||||||||||| | |||||||| | |||||||||| ||||||||||| ||| ||||| ||||||||||| ||||| || |||||||||| |
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| T |
30504409 |
ccggtgggagctaattcaaagaagttgtccatatgggagcctatgttggagcaattacggaatagactcaactcttggggtaataaatatgtgagccttg |
30504310 |
T |
|
| Q |
413 |
gaggtcgaattgttctcttgaattccgttttaaatg |
448 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||| |
|
|
| T |
30504309 |
gaggtagaattactcttctcaattccgttttgaatg |
30504274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 48043084 - 48043015
Alignment:
| Q |
378 |
acttaactcttgggggaataagtacgtgagccttggaggtcgaattgttctcttgaattccgttttaaat |
447 |
Q |
| |
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|||||| |||||||||||||||| | | |||||||| |||||||||||||| || ||||| || |||||| |
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| T |
48043084 |
acttaattcttgggggaataagttcattagccttggtggtcgaattgttcttttaaattcggtgttaaat |
48043015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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