View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_3 (Length: 957)
Name: NF2158_high_3
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 14 - 716
Target Start/End: Complemental strand, 30351113 - 30350412
Alignment:
| Q |
14 |
ttattctattgttaggacttaggaagttgcatagtgcaaggttaattagcactagcttctatatactattttcaacttaatagggaataaagtgtgatgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30351113 |
ttattctattgttaggacttaggaagttgcatagtgcaaggttaattagcactagcttctatatactattttcaacttaatagggaataaagtgtgatgt |
30351014 |
T |
|
| Q |
114 |
ggtcatgtcgacccaataaaaatatgatttggacttcatgttaaaatatcattcgaagctaataaataactaaaatcgaacccacttaggttgggttaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
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| T |
30351013 |
ggtcatgtcgacccaataaaaatatgatttggacttcatgttaaaatatcattcgaaactaataaataactaaaatcgaacccacttagaatgagttaac |
30350914 |
T |
|
| Q |
214 |
ctaatgatattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattcttccacaatatatacaaagaagagagatattacggattcc |
313 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
30350913 |
ctaatgatattgacttaagatttgagagtgagttcatcatcaagatctcatgtttgattcttccacagtatatacaaagaagagagatattgcggattcc |
30350814 |
T |
|
| Q |
314 |
taccgcgtcccgacgcatcaaatgtctccacgacatagtatattaatcttttacataattgacaaatgacataataaggcttttgacaaatgacaataat |
413 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30350813 |
taccgcgtcccaacgcttcaaatgtctccacgacatagtatattaatcttgtacataattgacaaatgacataataaggcttttgacaaatgac-ataat |
30350715 |
T |
|
| Q |
414 |
aaggcttatatgtttgatgatcttatgcctcatgaaataacaaaattaaacagcatgatgtagggaaaaataactaaagtggagttgatgtatatgaata |
513 |
Q |
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| T |
30350714 |
aaggcttatatgtttgatgatcttatgcctcatgaaataacaaaattaaacagcatgatgtagggaaaaataactaaagtggagttgatgtatatgaata |
30350615 |
T |
|
| Q |
514 |
tgtgatcaccatatctcatacaaaaagcaaatattcttacgcaccatcaaaagcatagagaataaggaacccaatatagtgccatacaagctagtggtgt |
613 |
Q |
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| T |
30350614 |
tgtgatcaccatatctcatacaaaaagcaaatattcttacgcaccatcaaaagcatagagaataaggaacccaatatagtgccatacaagctagtggtgt |
30350515 |
T |
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| Q |
614 |
atggaacatagttataaaaacttaacctatctacaaaagatgagattttctcactaaactctccagaaactgctgcaaaattgaacttatttctacaccc |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30350514 |
atggaacatagttataaaaacttaacctatctacaaaagatgagattttctcactaaactctccagaaactgctgcaaaattgaacttatttctaccccc |
30350415 |
T |
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| Q |
714 |
ccc |
716 |
Q |
| |
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||| |
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| T |
30350414 |
ccc |
30350412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 711 - 957
Target Start/End: Complemental strand, 30350392 - 30350146
Alignment:
| Q |
711 |
ccccccaaattgaaagagtcaagatacaaggtccactacatttacaacaaccacatgtagttcactatcactaagaattgaactaagaaaaccaattttt |
810 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350392 |
ccccccgaattgaaagagtcaagatacaaggtccactacatttacaacaaccacatgtagttcactatcactaagaattgaactaagaaaaccaattttt |
30350293 |
T |
|
| Q |
811 |
ctcttacctttcatatataccatattggaaatttctaaattgatcaaactcacctaatgtatgacatttactttttgtcatcaaatcatgcacttaacat |
910 |
Q |
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| T |
30350292 |
ctcttacctttcatatataccatattggaaatttctaaattgatcaaactcacctaatgtatgacatttactttttgtcatcaaatcatgcacttaacat |
30350193 |
T |
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| Q |
911 |
gaggcaagaaccttagcaactttcctacatcattcttaatatatttt |
957 |
Q |
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| T |
30350192 |
gaggcaagaaccttagcaactttcctacatcattcttaatatatttt |
30350146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 34041657 - 34041588
Alignment:
| Q |
204 |
ttgggttaacctaatgatattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattc |
273 |
Q |
| |
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||||||| |||| || ||||||||||||||||| ||||| | || || ||||| ||||||||||||||| |
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| T |
34041657 |
ttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattc |
34041588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 27223182 - 27223129
Alignment:
| Q |
221 |
tattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattct |
274 |
Q |
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||||||||||||||||||||||| | || || ||||| ||||||||| |||||| |
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| T |
27223182 |
tattgacttaggatctgggagtgtgctcttcttcaaggtctcaggttcgattct |
27223129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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