View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_30 (Length: 465)
Name: NF2158_high_30
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 5229605 - 5230042
Alignment:
| Q |
11 |
cacagagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccagcaaagatgttaatttttcaagtcttgtcttaactcttaactacca |
110 |
Q |
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| T |
5229605 |
cacaaagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccacaaaagatgttaatctttcaagtcttgtcttaactcttaactacca |
5229704 |
T |
|
| Q |
111 |
tcattggcatagtttaatcacaactaatgaaccaaacatatatactatatatgctttaacttcactcctactcnnnnnnnnnnnnnnnnnnnntcattaa |
210 |
Q |
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| T |
5229705 |
tcattggcatagtttaatcacaaccaatgaaccaaacatatatactatatatgctttaacttcactcctactcaaaaaataaaaaaataaaa-tcattaa |
5229803 |
T |
|
| Q |
211 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5229804 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
5229903 |
T |
|
| Q |
311 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttcttttctctatagttttgtatgctgagaggctcag |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
5229904 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttctcttctctatagttttgtttgctgagaggctcag |
5230003 |
T |
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| Q |
411 |
tttcatttcttccacttctattttcaagttcaaaacatg |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5230004 |
tttcatttcttccacttctattttcaagttcaaaacatg |
5230042 |
T |
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