View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_34 (Length: 461)
Name: NF2158_high_34
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 24 - 447
Target Start/End: Original strand, 45680457 - 45680881
Alignment:
| Q |
24 |
gcataagtaaattgattaaaatggtccgctacataacaaggagtaaccatagtaattctcatccacctataaatagagtttcaaacagatccgaaacttt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45680457 |
gcataagtaaattgattaaaatggtccgctacataacaaggagtaaccatagtaattctgatccacctataaatagagttccaaacagatccgaaacttt |
45680556 |
T |
|
| Q |
124 |
cacagtgtaaaaataaatgagatgagttttccaaagagtcacgatcagaaacacacctccgagactcaatatcaataataa-acggcgaaataagttatc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
45680557 |
cacagtgtaaaaataaatgagatgagtttttcaaatagtcacgaccaaaaacacacctccgagactcaatatcaataacaccacggcgaaataagttatc |
45680656 |
T |
|
| Q |
223 |
ctttgtaggtaacctatctcgaaacatgcgtcaagtcgacagtaaaacattcatttttcttataggttggattgcctcccaacatcatcctttataatgt |
322 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45680657 |
ctttgtaggtaacctatctcaaaacatgcgccaagtcgacagtaaaacattcatttttcttatagtttggattgcctcccaacatcatcctttataatgt |
45680756 |
T |
|
| Q |
323 |
atgatccatatactttctttgacctgttcctttacacagtatatttttcctatcttttaagaatatcgttatgatcggattgcgaggcacaaagtgaatc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45680757 |
atgatccatatactttctttgacctgttcctttacacagtatatttttcctatcttttaagaatatcgttatgatcggattgcgaggcacaaagtgaatc |
45680856 |
T |
|
| Q |
423 |
caatcacgaagatggatgaatatat |
447 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45680857 |
caatcacgaagatggatgaatatat |
45680881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 25529923 - 25529790
Alignment:
| Q |
24 |
gcataagtaaattgattaaaatggtccgctacataacaaggagtaaccatagtaattctcatccacctataaatagagtttcaaacagatccgaaacttt |
123 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| | ||||||||||||| |||| ||||| ||||| |||||| |
|
|
| T |
25529923 |
gcataggtaaattgattaaaatgatccgctacataacaaggtgtaaccatagaaattccgagccacctataaataaagttccaaactgatccaaaacttc |
25529824 |
T |
|
| Q |
124 |
cacagtgtaaaaataaatgagatgagttttccaa |
157 |
Q |
| |
|
|| || || |||||||||||||| ||||||| |
|
|
| T |
25529823 |
tgcattgcaataataaatgagatgatgtttccaa |
25529790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 257
Target Start/End: Original strand, 22583418 - 22583643
Alignment:
| Q |
33 |
aattgattaaaatggtccgctacataacaaggagtaaccatagtaattctcatccacctataaatagagtttcaaacagatccgaaactttcacagtgta |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| || | || ||||||||||||| | | |||||||| || || || ||| || | |
|
|
| T |
22583418 |
aattgattaaaatgatccgctacataacaaggagtaaccgtagagatacgcaaccacctataaataaaatgccaaacagaaccaaagctgctacaatgca |
22583517 |
T |
|
| Q |
133 |
aaaataaatgagatgagttttccaaagagtcacgatcagaaacacacctccgagactcaatatcaataataa-acggcgaaataagttatcctttgtagg |
231 |
Q |
| |
|
| |||||||||||||| ||||||| || | | ||| ||||||| | |||| | ||||||||| || |||||||||||||||||||||| | |
|
|
| T |
22583518 |
ataataaatgagatgaagtttccaaggaaccgcatccagcaacacacatatgagaagtattatcaataacgtcactgcgaaataagttatcctttgtatg |
22583617 |
T |
|
| Q |
232 |
taacctatctcgaaacatgcgtcaag |
257 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
22583618 |
aaacctatctcgaaacagacgtcaag |
22583643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 31069516 - 31069478
Alignment:
| Q |
33 |
aattgattaaaatggtccgctacataacaaggagtaacc |
71 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
31069516 |
aattgattaaaatgatccgctacataacaaggggtaacc |
31069478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 31069340 - 31069303
Alignment:
| Q |
211 |
aaataagttatcctttgtaggtaacctatctcgaaaca |
248 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |
|
|
| T |
31069340 |
aaataagttatcctttgtgggcaacctatctcgaaaca |
31069303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 22564180 - 22563947
Alignment:
| Q |
25 |
cataagtaaattgattaaaatggtccgctacataacaaggagtaaccatagtaattctcatccacctataaatagagtttcaaacagatccgaaactttc |
124 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||| |||||||||||| ||| | ||||||||||||||| | || ||||| || || || || |
|
|
| T |
22564180 |
cataaataaattggttaaagtggtccactacataacaaagagtaaccatagaaataccaatccacctataaataaaattccaaacggaaccaaagctgcg |
22564081 |
T |
|
| Q |
125 |
acagtgtaaaaataaatgagatgagttttccaaagagtcacgatcagaaacacacctccgagactcaatatcaataata-aacggcgaaataagttatcc |
223 |
Q |
| |
|
|| || | ||||||||| ||||| |||||||||| ||| | | || |||||| || |||| ||| |||||||||| | ||||||||||||||| |
|
|
| T |
22564080 |
gcaatgcagaaataaatgggatgaactttccaaagatccacaacctgacacacacatctgagagtcatgatcaataataccgtgacgaaataagttatcc |
22563981 |
T |
|
| Q |
224 |
tttgtaggtaacctatctcgaaacatgcgtcaag |
257 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||| |
|
|
| T |
22563980 |
ttttcaggtaacctatctcgaaacaggcgccaag |
22563947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 1462052 - 1462015
Alignment:
| Q |
209 |
cgaaataagttatcctttgtaggtaacctatctcgaaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1462052 |
cgaaataagttatcctttgtaggtaacctatctcgaaa |
1462015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 12092371 - 12092323
Alignment:
| Q |
209 |
cgaaataagttatcctttgtaggtaacctatctcgaaacatgcgtcaag |
257 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||| ||| |||| |
|
|
| T |
12092371 |
cgaaataagttatcctttgtaggcaaccaatcttgaaacaagcgccaag |
12092323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University