View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_35 (Length: 456)
Name: NF2158_high_35
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 70 - 417
Target Start/End: Original strand, 46402296 - 46402643
Alignment:
| Q |
70 |
atcatgtgatttggagagttgactgaatatattgttttgcatattgtgcattctatgattgctctgtttcgggttgacttcacaggaagaggagagcttg |
169 |
Q |
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| T |
46402296 |
atcatttgatgtggaaagttgactgaatatatt-ttttgcagattgtggattctgtgattgctttgtttcgggttgacttcactggaagaggagagcttg |
46402394 |
T |
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| Q |
170 |
ctgagcgccaggtctgtgaattagtcatgaacatgcactaacagatttttaatcccttta-tgtccgcttttactgaaatgaaaaagtttctttgcagca |
268 |
Q |
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| T |
46402395 |
ctgagcgccaggtccgtgaatctgtcatgaacatgcactaacagatttttaatcccttttgtgtcagcttttactgaaatgaaaaagttcctttgcagca |
46402494 |
T |
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| Q |
269 |
aaaattggcacagatgctttctcgattgatcaagatagctgaggaattcaacgtagctatttatatgacaaatcagggtaaactcactcctaagtccaac |
368 |
Q |
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| T |
46402495 |
aaaattggcacagatgctttctcgattgatcaagatagctgaggaattcaatgttgctgtttatatgacaaatcagggtaaattcactcccaagtccaac |
46402594 |
T |
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| Q |
369 |
ctgattattgattttgttcatagcttttgtttttagatgtggcttttat |
417 |
Q |
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| T |
46402595 |
ctgattattgtttttgttcacagctttagttttaagctgtggcttttat |
46402643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 74 - 439
Target Start/End: Original strand, 39950937 - 39951289
Alignment:
| Q |
74 |
tgtgatttggagagttgactgaatatattgttttgcatattgtgcattctatgattgctctgtttcgggttgacttcacaggaagag--gagagcttgct |
171 |
Q |
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| T |
39950937 |
tgtgatgtggggagttgattgaatatatt-ttttgcagattgtggattctgtgattgctctgtttc-------------aggaagagatgagagcttgct |
39951022 |
T |
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| Q |
172 |
gagcgccaggtctgtgaattagtcatgaacatgcactaacagatttttaatccctttatgtccgcttttactgaaatgaaaaagtttctttgcagcaaaa |
271 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
39951023 |
gagtgccaggtctgtgaattagtcatgaacatgcactaacagatttttaatccctttatgttagcttttactgaaatgaaaa-gtttctttgcagcaaaa |
39951121 |
T |
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| Q |
272 |
attggcacagatgctttctcgattgatcaagatagctgaggaattcaacgtagctatttatatgacaaatcagggtaaactcactcctaagtccaacctg |
371 |
Q |
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| T |
39951122 |
attggcacagatgctttctcgattgatcaagatagctgaggaatttaacgttgctgtttatatgacaaatcagggtaaactcactcctaactccaacctg |
39951221 |
T |
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| Q |
372 |
attattgattttgttcatagcttttgtttttagatgtggcttttatagtaagacttgatgcgtatttc |
439 |
Q |
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| T |
39951222 |
attattgattttgttcatagcttttgtttttagctgtggcttttacagtaagacttgatgcgcatttc |
39951289 |
T |
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