View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_high_39 (Length: 431)

Name: NF2158_high_39
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_high_39
NF2158_high_39
[»] chr2 (3 HSPs)
chr2 (14-192)||(26661745-26661923)
chr2 (291-411)||(26661526-26661646)
chr2 (299-407)||(6049935-6050043)
[»] chr6 (3 HSPs)
chr6 (16-191)||(21481663-21481840)
chr6 (291-411)||(21481444-21481564)
chr6 (291-407)||(19701182-19701298)
[»] scaffold0586 (1 HSPs)
scaffold0586 (291-407)||(9615-9731)
[»] chr8 (2 HSPs)
chr8 (291-386)||(32717808-32717903)
chr8 (291-386)||(10637691-10637786)
[»] chr1 (2 HSPs)
chr1 (291-386)||(22893846-22893941)
chr1 (299-407)||(44306152-44306259)
[»] chr7 (2 HSPs)
chr7 (305-407)||(13331531-13331633)
chr7 (305-407)||(13342446-13342548)
[»] chr5 (1 HSPs)
chr5 (305-407)||(5672002-5672104)
[»] chr4 (1 HSPs)
chr4 (299-407)||(13893697-13893805)
[»] chr3 (1 HSPs)
chr3 (305-384)||(15761973-15762052)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 26661923 - 26661745
Alignment:
Q  14 aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtggg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||     
T  26661923 aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgttatggttattagcatattttggaaaaagttagaagaaggtggt 26661824  T
Q  114 ttaataaaaacaagttgtctctaaccnnnnnnngcattgattcatgattgggaaaaaacaagaattgccaaacagtggg 192  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  26661823 ttaataaaaacaagttgtctctaaccttttttttcattgattcatgattgggaaaaaacaagaattgccaaacagtggg 26661745  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 26661646 - 26661526
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
Q  391 ttgacaagcagttgatgcaca 411  Q
    ||| |||||||||||||||||    
T  26661546 ttggcaagcagttgatgcaca 26661526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 407
Target Start/End: Complemental strand, 6050043 - 6049935
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||  |||||||||||||| | |||| || |  ||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  399 cagttgatg 407  Q
    |||||||||    
T  6049943 cagttgatg 6049935  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 21481840 - 21481663
Alignment:
Q  16 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtgggtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21481840 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgggtt 21481741  T
Q  116 aataaaaacaagttgtctct-aaccnnnnnnngcattgattcatgattggg-aaaaaacaagaattgccaaacagtgg 191  Q
    |||||||||||||||||||| |||        ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21481740 aataaaaacaagttgtctctaaacttttttttgcattgattcatgattgggaaaaaaacaagaattgccaaacagtgg 21481663  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 21481564 - 21481444
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| ||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
Q  391 ttgacaagcagttgatgcaca 411  Q
    ||| |||| ||||||||||||    
T  21481464 ttggcaagtagttgatgcaca 21481444  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 19701298 - 19701182
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||| ||||||||| |||||  ||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  391 ttgacaagcagttgatg 407  Q
     |  |||||||||||||    
T  19701198 atagcaagcagttgatg 19701182  T

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Target: scaffold0586 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 9731 - 9615
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||| |||||  ||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  391 ttgacaagcagttgatg 407  Q
       ||||||||||||||    
T  9631 acaacaagcagttgatg 9615  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 32717808 - 32717903
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaac 386  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||| |||||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaac 32717903  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 10637786 - 10637691
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaac 386  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||||| |||||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaac 10637691  T

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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 22893941 - 22893846
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaac 386  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||||| |||||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaac 22893846  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 407
Target Start/End: Complemental strand, 44306259 - 44306152
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||| ||||||||||||||||||||||||||||||   | | |||| |||||||||||||  |||||||||||||| | |||| || |  ||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  399 cagttgatg 407  Q
    |||||||||    
T  44306160 cagttgatg 44306152  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 13331531 - 13331633
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  405 atg 407  Q
    |||    
T  13331631 atg 13331633  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 13342446 - 13342548
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  405 atg 407  Q
    |||    
T  13342546 atg 13342548  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 5672002 - 5672104
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  405 atg 407  Q
    |||    
T  5672102 atg 5672104  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 299 - 407
Target Start/End: Original strand, 13893697 - 13893805
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||  |||||||||||||| | |||| || | |||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaag 13893796  T
Q  399 cagttgatg 407  Q
    |||||||||    
T  13893797 cagttgatg 13893805  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 15761973 - 15762052
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaa 384  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||  |||| |||||||||||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaa 15762052  T

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