View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_40 (Length: 430)
Name: NF2158_high_40
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 1698152 - 1697717
Alignment:
| Q |
2 |
gtaaatttctcatgaagatgagaataaaatcatgattaactacctataaacttttttgtgtggtgaaaatacggaaccaaaaactcaaaacataatagaa |
101 |
Q |
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| T |
1698152 |
gtaaatttctcataaagatgagaataaaatcatgattaaccacctataaacttttttgtgcggtgaaaatacggaaccaaaaactcaaaacataatagaa |
1698053 |
T |
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| Q |
102 |
agacctatgaataacattttcagtataatcactcaaaagagtgtgcgagattct---tcttcttnnnnnnnnnn--gagtgcgagataaagtcactggag |
196 |
Q |
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| T |
1698052 |
agacctatgaataacattttcagtataatcactcaaaagagtgtgcgagattcttcttcttcttaaaaaaaaaaaagagtgcgagataaagtcactagag |
1697953 |
T |
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| Q |
197 |
gaagaagctga---------------------ctagaggaagaaactccattatcaatcatattaacaattgtgagttattcttagccaagctaaaccat |
275 |
Q |
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| T |
1697952 |
gaagaagctgaaggacatgatgatgatactcactagaggaagaaactccattatcaatcatattaacagttgtgagtgattcttggccaagctaaaccat |
1697853 |
T |
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| Q |
276 |
gataaatacctgaaaatggtgagatatgggtgtgtagannnnnnnnngggttaagaactttagtggctaaaatttaccttttgaaataaataaatatgat |
375 |
Q |
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| T |
1697852 |
gataaatacctgaaaatggtgagatat-ggtgtgtagattttttttt-ggttaagaagtctaatgactaaaatttaccttttaaaataaataaatattat |
1697755 |
T |
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| Q |
376 |
gtttgagattcgaattctaactcatgtatataacaatg |
413 |
Q |
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| T |
1697754 |
gtttgagattcgaatcctaactcatgcatataacaatg |
1697717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 1690009 - 1689899
Alignment:
| Q |
14 |
tgaagatgagaataaaatcatgattaactacctataaacttttttgtgtggtgaaaatacggaaccaaaaactcaaaacataatagaaagacctatgaat |
113 |
Q |
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| T |
1690009 |
tgaagatgagaataaaatcatgagcaactccttgttaacttttttgttaggtggaaatacgaaaccaaagactcaaaacatagtaggaagatatatgaat |
1689910 |
T |
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| Q |
114 |
aacattttcag |
124 |
Q |
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| T |
1689909 |
aacattttcag |
1689899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 35904569 - 35904633
Alignment:
| Q |
345 |
aaatttaccttttgaaa-taaataaatatgatgtttgagattcgaattctaactcatgtatataa |
408 |
Q |
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| T |
35904569 |
aaatttaccttttaaaaataaataaataaggtgtttgagattcaaactctaactcgtatatataa |
35904633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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