View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_43 (Length: 411)
Name: NF2158_high_43
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 390
Target Start/End: Original strand, 10013699 - 10014089
Alignment:
| Q |
4 |
cagagatgaacacactagagtacaatgattgatcatgaagttcgactaatcgtgtctacgt----gacagtagattgactacattagttttatatgtgag |
99 |
Q |
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| T |
10013699 |
cagaaatgaacacactagagtacaatgattgatcatgaagttcgactaatcgtgtctacttatccgacagtagattgactacattagttttatatgtgag |
10013798 |
T |
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| Q |
100 |
ttagagttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaactatactcaacactaattataa |
199 |
Q |
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| T |
10013799 |
ttagagttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaactatactcaacactaattataa |
10013898 |
T |
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| Q |
200 |
gtttcagttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaaaacaatgaatgatattggta |
299 |
Q |
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| T |
10013899 |
gtttcagttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaaaacaatgaatgatattggta |
10013998 |
T |
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| Q |
300 |
ttatcttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacataaccataaattc |
390 |
Q |
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| T |
10013999 |
ttatcttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacataaccataaattc |
10014089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 10013483 - 10013520
Alignment:
| Q |
238 |
aagagctgcttttatgaaactaatgctaagctctttca |
275 |
Q |
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| T |
10013483 |
aagagttgcctttatgaaactaatgctaagctctttca |
10013520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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