View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_52 (Length: 377)
Name: NF2158_high_52
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 45682062 - 45681878
Alignment:
| Q |
83 |
tatataaacaatcccagctcagcattgataagacaaattaattataatatactgtacagcatattatacaagtgattttggattagatttgtctcaacta |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45682062 |
tatataaacaatcccagctcagcattgataagacaaattaattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaacta |
45681963 |
T |
|
| Q |
183 |
ttgtctgtctt-----gattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
262 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681962 |
ttgtctgtcttgatttgattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 45681824 - 45681749
Alignment:
| Q |
286 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaattaaggtggcaccttaccctctat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681824 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaattaaggtggcaccttaccctctat |
45681749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 45682126 - 45682087
Alignment:
| Q |
19 |
atataaatgggggaccaggggccacaattactaaaatttc |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45682126 |
atataaatgggggaccaggggccacaattactaaaatttc |
45682087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University