View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_54 (Length: 367)
Name: NF2158_high_54
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 2936668 - 2937000
Alignment:
| Q |
20 |
tatcagttattgaatttgtatgatcttcaacatatgtaatacccttcactattaaaacattttcagttcacgagaaaaagagtagaaatgcaccaactaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2936668 |
tatcagttattgaatttgtatgatcttcaacatatgtaatacccttcactattaaaacattttcagttcacgagaaaaagagtagaaatgcaccaactaa |
2936767 |
T |
|
| Q |
120 |
gcaagcattaccaagtggtattggcttaacaattgttatgttaatctcatcattcaatttcttcccatgtgctcatgatcgatcaacaagataaattgca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2936768 |
gcaagcattaccaagtggtattggcttaacagttgttatgttaatctcatcattcaatttcttcccatgtgctcatgatcgatcaacaagataaattgca |
2936867 |
T |
|
| Q |
220 |
ttatcatatctaattatctatcaatctgatccatgttcacttcatgtgtgacatttcctgtgtaattgaacacccatgagtcccatgacgggctacctca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2936868 |
ttatcatatctaattatctatcaatctgatccatgttcacttcatgtgtgacatttcctgtgtaattgaacacccatgagtcccatgacgggctacctca |
2936967 |
T |
|
| Q |
320 |
atcagccaccttaaagccatttgaatgttatat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2936968 |
atcagccaccttaaagccatttgaatgttatat |
2937000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 352
Target Start/End: Complemental strand, 37410629 - 37410413
Alignment:
| Q |
129 |
accaagtggtattggcttaacaattgttatgttaatctcatcattcaatttcttcccat-gtgctcatgatcgatcaacaagataaattgcattatcata |
227 |
Q |
| |
|
||||| ||||| |||| ||||||||||| |||||||||| ||||| ||||||| | |||||||||||| |||| || |||||||||||||||| |
|
|
| T |
37410629 |
accaaatggtagtggcctaacaattgttgcattaatctcattattcagcatcttccccttgtgctcatgatc----aacaggacaaattgcattatcata |
37410534 |
T |
|
| Q |
228 |
tctaattatctatcaatctgatccatgttcacttcatgtgtgacatttcctgtgtaattgaacacccatgagtcccatgacgggcta-cctcaatcagcc |
326 |
Q |
| |
|
||| || |||||||| || |||||||||||| |||||| ||| ||||| ||||| ||||||| ||||||||| ||| |||| |||| |||| || |
|
|
| T |
37410533 |
ccta----tc-atcaatctcattcatgttcacttcctgtgtgccatgtcctgagtaatggaacaccaatgagtcccctgatttgctaccctccatcaacc |
37410439 |
T |
|
| Q |
327 |
accttaaagccatttgaatgttatat |
352 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
37410438 |
accttaaagccatttgaatattatat |
37410413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University