View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_high_56 (Length: 362)
Name: NF2158_high_56
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_56 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 40279474 - 40279823
Alignment:
| Q |
17 |
attacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279474 |
attacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaatct |
40279573 |
T |
|
| Q |
117 |
gtcagaacataatggcgaaaataaaacctaacttgaaattttcta-----aggaaaaaccgttcaaataaaacctaacatatatcagagatactgtactt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | || | | ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40279574 |
gtcagaacataatggcgaaaataaaacctaa-ttaacataggaaaaaaatacgaaaaaccgttcaaataaaacctaacatatatcagagataccgtactt |
40279672 |
T |
|
| Q |
212 |
atgaagatcaaaccnnnnnnngatcaaaatattgaatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataag |
311 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279673 |
atcaagatcaaaccaaaaaaataacaaaatatttaatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataag |
40279772 |
T |
|
| Q |
312 |
ttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279773 |
ttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtt |
40279823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 40458876 - 40458527
Alignment:
| Q |
17 |
attacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458876 |
attacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaatct |
40458777 |
T |
|
| Q |
117 |
gtcagaacataatggcgaaaataaaacctaacttgaaattttcta-----aggaaaaaccgttcaaataaaacctaacatatatcagagatactgtactt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | || | | ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40458776 |
gtcagaacataatggcgaaaataaaacctaa-ttaacataggaaaaaaatacgaaaaaccgttcaaataaaacctaacatatatcagagataccgtactt |
40458678 |
T |
|
| Q |
212 |
atgaagatcaaaccnnnnnnngatcaaaatattgaatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataag |
311 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458677 |
atcaagatcaaaccaaaaaaataacaaaatatttaatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataag |
40458578 |
T |
|
| Q |
312 |
ttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458577 |
ttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtt |
40458527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 40284666 - 40284784
Alignment:
| Q |
244 |
tgaatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgtt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284666 |
tgaatttgtagtactctatggaaggaaggatttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgtt |
40284765 |
T |
|
| Q |
344 |
ctgtgtatatcagcatgtt |
362 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40284766 |
ctgtgtatatcagcatgtt |
40284784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 40459172 - 40458964
Alignment:
| Q |
17 |
attacattgagtactgcatgccaacatcaaaattatagagtaataacgttcacttaaaatttgaaatacacactaacacaaccaggaaattaaacaatct |
116 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||||||||| ||| |||| | | |||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
40459172 |
attatattgagtactacatgtcaacatcaaaattatagagtaaaaacattcattgagaatttgaaatacacgctaacacaatcagcaaattaaacaatct |
40459073 |
T |
|
| Q |
117 |
gtcagaacataatggcgaaaataaaacc----taacttgaaattttctaaggaaaaaccgttcaaataaaacctaacatatatcagagatactgtactta |
212 |
Q |
| |
|
||| ||||||| | |||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
40459072 |
gtctaaacataacagagaaaataaaacctaattaacttgaaattttttaa-gaaaaacccttcaaataaaacctaacatatatcagaaatactgtactga |
40458974 |
T |
|
| Q |
213 |
tgaagatcaa |
222 |
Q |
| |
|
| |||||||| |
|
|
| T |
40458973 |
tcaagatcaa |
40458964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University