View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_57 (Length: 358)
Name: NF2158_high_57
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 23266062 - 23265865
Alignment:
| Q |
154 |
ttggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtgcttttattatatatgaaagaagaatataactttggaattt |
253 |
Q |
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| T |
23266062 |
ttggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtgcttttattatatatgaaagaagaatataactttggaattt |
23265963 |
T |
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| Q |
254 |
cagcttttgatatagaaaatataatctattgccatccttgctta-cttgcattataagttgaaagaggtaatatagcgtctcttgtcttattcatctc |
350 |
Q |
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| T |
23265962 |
cagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttgaaagaggtaatatagcgtctcttgtcttattcttctc |
23265865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 23251654 - 23251295
Alignment:
| Q |
5 |
caagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaac-tttatttttggattgtagaataggaaatgtctatac |
103 |
Q |
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| T |
23251654 |
caagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatac |
23251555 |
T |
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| Q |
104 |
tacaacctttttaattggtagcataaattctgcatatacataggttgaactt-----ggaatttcttttcatagcttttatgtgaatttttaaatcacta |
198 |
Q |
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||||||| ||| |||||||||| |||| ||||||||||||||||||||| || ||||||| |||| |||||||||||||||||| ||||||||||| |
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| T |
23251554 |
tacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttatagcttttatgtgaattattaaatcacta |
23251455 |
T |
|
| Q |
199 |
atcaatcataaagtgc----------ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccat |
288 |
Q |
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| T |
23251454 |
atcaagcgtaaagtgcatctcatcctttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccat |
23251356 |
T |
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| Q |
289 |
ccttgctta-cttgcattataagttgaaagaggtaatatagcgtctcttgtcttattcatctc |
350 |
Q |
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| ||||||| | || || ||||||||| |||||||| | |||||||||||||||| |||| |
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| T |
23251355 |
ctttgcttagcctgtat--taagttgaagaaggtaatacggtgtctcttgtcttattcttctc |
23251295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 23257627 - 23257386
Alignment:
| Q |
5 |
caagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtctatact |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23257627 |
caagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatact |
23257528 |
T |
|
| Q |
105 |
acaacctttttaattggtagcataaattctgcatatacataggttgaactt-----ggaatttcttttcatagcttttatgtgaatttttaaatcactaa |
199 |
Q |
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| T |
23257527 |
acaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcactaa |
23257428 |
T |
|
| Q |
200 |
tcaatcataaagtg-------cttttattatatatgaaagaa |
234 |
Q |
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|||| | ||||||| ||||||||||||||||||||| |
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| T |
23257427 |
tcaagcttaaagtgcatctgacttttattatatatgaaagaa |
23257386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23266192 - 23266061
Alignment:
| Q |
1 |
ttttcaagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23266192 |
ttttcaagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtcta |
23266093 |
T |
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| Q |
101 |
tactacaacctttttaattggtagcataaatt |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23266092 |
tactacaacctttttaattggtagcataaatt |
23266061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 23247242 - 23246979
Alignment:
| Q |
5 |
caagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtctatact |
104 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||| | | ||| ||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
23247242 |
caagattttcaagatgatgaggtatcactatggaacttttaaatttaatgtcttttgtttacttttctttttggattgtaggataggaaatgtctatact |
23247143 |
T |
|
| Q |
105 |
acaacctttttaattggtagcataaattctgcatatacataggttgaactt-----ggaatttcttttcatagc-ttttatgtgaatttttaaatcacta |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||| ||||| ||||||||||| | ||||||||||| |
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| T |
23247142 |
acaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttatagctttttatgtgaa-tattaaatcacta |
23247044 |
T |
|
| Q |
199 |
atcaatcataaagtg----------cttttattatatatgaaagaagaatataactttggaattt |
253 |
Q |
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||| | |||| |||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
23247043 |
atcgagcatatagtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 23283264 - 23283160
Alignment:
| Q |
5 |
caagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttgg-tttaactttatttttggattgtagaataggaaatgtctatac |
103 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||| || |||||| ||| ||| ||||||||||||||||| | |||||||||||| |
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| T |
23283264 |
caagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtagaattgaaaatgtctatac |
23283165 |
T |
|
| Q |
104 |
tacaa |
108 |
Q |
| |
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||||| |
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|
| T |
23283164 |
tacaa |
23283160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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