View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_6 (Length: 865)
Name: NF2158_high_6
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 536 - 852
Target Start/End: Complemental strand, 40716536 - 40716225
Alignment:
| Q |
536 |
tataatattcaccatctgttaacttatcaactatcaacaactttcttcgatcatagtctaactagagatttcaatttaattaaaatccaattatctcaag |
635 |
Q |
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| T |
40716536 |
tataatattcactatctgttaacttatcacctattaacaactttctccgatcatagtctaaccagagatttcaatttaattaaaatccaattatctcaag |
40716437 |
T |
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| Q |
636 |
agattattttgaggcagttatcattctcaagagattaatcactagaagttgaatgcagagatatataacattattcaaaagnnnnnnnngattgcatgac |
735 |
Q |
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| T |
40716436 |
agattattttgaggcagttatcattctcaagagattaatcactagaag--gaatgtaga---atataacattattcaaaagaaaaaaaagattgcatgac |
40716342 |
T |
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| Q |
736 |
atagtcctccctactaatgttgtgagcataacacaacaagaaacggcgcgtgaactcaaagaaaatcctatatattaaggaaagaggacatatgtcctaa |
835 |
Q |
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| T |
40716341 |
atagtcctccctactaatgttgtgagcataacacaacaagaaacggcgcgtgaactcaaagaaaatcctatatattaaggaaagaggacatatgtcctaa |
40716242 |
T |
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| Q |
836 |
ccaaaccaagctgattt |
852 |
Q |
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| T |
40716241 |
ccaaaccaagctgattt |
40716225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 111 - 317
Target Start/End: Complemental strand, 40716878 - 40716670
Alignment:
| Q |
111 |
gtttaaccagtaatttattacatatgagtgaatttaatacatgattccgtggttatttagttaatgggagtagtgatgagtgattttgcttcacaac--a |
208 |
Q |
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| T |
40716878 |
gtttagccagtaatttattacatatgagttaatttaatacatgattccgtggttatttagttaatgggagtagtgatgagtgattttgcttcacaactga |
40716779 |
T |
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| Q |
209 |
attgattgatatggagacaaaaaatatttgagagtgccggcatcattgaaattgaaagacaaagatatcatatcacacaaatatagtaagacataacata |
308 |
Q |
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| T |
40716778 |
attgattgatatggagacacaaaatatttgagagtgccggcatcattgaaattgaaagacaaagatatcatatcacacaaatatagtaagacataacata |
40716679 |
T |
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| Q |
309 |
agtgatagt |
317 |
Q |
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| T |
40716678 |
agtgatagt |
40716670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 28756533 - 28756478
Alignment:
| Q |
48 |
cactcattatgctaaaatcttaaggcattcaataatatattttattttagcttctt |
103 |
Q |
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| T |
28756533 |
cactccttgtgctgaaatcttcaggcattcagtaatatatttcattttagcttctt |
28756478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 40716591 - 40716534
Alignment:
| Q |
471 |
cggtaagttcaacaattaatttcatca--aatcatacaaattcaattcgttaagttat |
526 |
Q |
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| T |
40716591 |
cggtaagttcaataactaattttatcatcaatcatacaaattcaattcgctaagttat |
40716534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 7901003 - 7900954
Alignment:
| Q |
54 |
ttatgctaaaatcttaaggcattcaataatatattttattttagcttctt |
103 |
Q |
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| T |
7901003 |
ttatgctgaaatcttcaggctttcagtaatatatttcattttagcttctt |
7900954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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