View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_71 (Length: 302)
Name: NF2158_high_71
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_71 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 180626 - 180325
Alignment:
| Q |
1 |
tactgagattgtttagcgaaattcttaccacgccccgtggattgtattgaaaggatacaatcatcttttgagctgcgttgatttcgagatgtgtgatgag |
100 |
Q |
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| T |
180626 |
tactgagattgtttagagaaattgttaccacgccccggggatggaattggaaggataccatcatctttcgagctgcgttgatttggagaggtgtgatgag |
180527 |
T |
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| Q |
101 |
cgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcgacgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaa |
200 |
Q |
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| T |
180526 |
cgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcgacgcatgtagtcctcatgtgcgagaagagggctatgaagcttctcgaaggtaaa |
180427 |
T |
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| Q |
201 |
agggtgttggcgtgtgcaaatggaggcagcgatatcattatattcggcaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagactta |
300 |
Q |
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| T |
180426 |
agggtgttggcgtgtgcgaatggaggcagtgatatcattatattcgacaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagactta |
180327 |
T |
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| Q |
301 |
tc |
302 |
Q |
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| T |
180326 |
tc |
180325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 1701047 - 1700752
Alignment:
| Q |
7 |
gattgtttagcgaaattcttaccacgccccgtggattgtattgaaaggatacaatcatcttttgagctgcgttgatttcgagatgtgtgatgagcgaaat |
106 |
Q |
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| T |
1701047 |
gattgtttagagaaattgttaccacgtcctgtggatggaattggaaggataccatcatcctttgagctgcgttgatttggagaggtgtgatgagcgaaat |
1700948 |
T |
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| Q |
107 |
tcgctgtaggtacttgaatgtcaacctgaacaacttctcgacgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaaagggtg |
206 |
Q |
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| T |
1700947 |
tcgctgtaggtacttgaatgtcaacctgaacagcttctcgacgcaggtagtcatcatgtgcgagaagatggctatgaagctcctcaaaggtaaaagggtg |
1700848 |
T |
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| Q |
207 |
ttggcgtgtgcaaatggaggcagcgatatcattatattcggcaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagacttatc |
302 |
Q |
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| T |
1700847 |
ttggcgtgtgcgaatggaggcagcaatatcattatattcggcaccaagtccattgagaacaaatagggtaatatcatcatcagaaagagacttatc |
1700752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 3540597 - 3540528
Alignment:
| Q |
223 |
gaggcagcgatatcattatattcggcaccaagtctattgagaacaaagagggtaatatcatcatcagaaa |
292 |
Q |
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| T |
3540597 |
gaggcagcaatatcacgatattccgaaccaagaccattgagaacatagagggtgagatcatcatcagaaa |
3540528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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