View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_78 (Length: 292)
Name: NF2158_high_78
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_78 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47524036 - 47523825
Alignment:
| Q |
1 |
tacaggttgttcatcttaataagaccatgtcacgtcattcatagcctataatcactacaaccggtagaaaattcatgtaaaaagtccatcttctttcatc |
100 |
Q |
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| T |
47524036 |
tacaggttgttcatcttaataagaccatgtcacatcattcatagcctataatcacggcaaccggtagaaaattcatgtaaaaagtcca-cttctttcatc |
47523938 |
T |
|
| Q |
101 |
tttatgtgacttctatatt-nnnnnnnntcacaaatttggttgaactagtaaatgtcacttacattaacaatgtcataaaaagggaaaatttcttttatt |
199 |
Q |
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| T |
47523937 |
tttatgtgacttctatattaaaaaaaaatcacaaatttggtttaactagcaaatgtcgcttacattaacaatgtcataaaaagggcaaatttcttttatt |
47523838 |
T |
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| Q |
200 |
aaaaagtttgagt |
212 |
Q |
| |
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||||||||||||| |
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| T |
47523837 |
aaaaagtttgagt |
47523825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 11537531 - 11537341
Alignment:
| Q |
25 |
ccatgtcacgtcattcatagcctataatcactacaaccggtagaaaattcatgtaaaaagtccatcttc-tttcatctttatgtgacttctatatt-nnn |
122 |
Q |
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| T |
11537531 |
ccatgtcacatcactcatagcctataatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatcttctcgtgacttctatattacac |
11537432 |
T |
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| Q |
123 |
nnnnntcacaaatttggttgaactagtaaatgtcacttacattaacaatgtcat-aaaaagggaaaatttcttttattaaaaagtttgagt |
212 |
Q |
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| T |
11537431 |
aaaaatcacaaatttggttgaactagtaaatgtcgtttacagtaacaatgtcatcgaaaaagatagatttcttttattaaaatgtttgagt |
11537341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 11549203 - 11549014
Alignment:
| Q |
25 |
ccatgtcacgtcattcatagcctataatcactacaaccggtagaaaattcatgtaaaaagtccatcttc-tttcatctttatgtgacttctat-attnnn |
122 |
Q |
| |
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||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||| ||| || |
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| T |
11549203 |
ccatgtcacatcattcata-cctataatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttctctgacttatataatacac |
11549105 |
T |
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| Q |
123 |
nnnnntcacaaatttggttgaactagtaaatgtcacttacattaacaatgtca-taaaaagggaaaatttcttttattaaaaagtttgagt |
212 |
Q |
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||| |||||||||||||| | |||||| | ||||| ||||||||||| | |||| | ||||||||||||||||||||||||| |
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| T |
11549104 |
aaaaatcataaatttggttgaaccaataaatgacgtttacactaacaatgtcattgaaaaatatagatttcttttattaaaaagtttgagt |
11549014 |
T |
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