View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_high_8 (Length: 764)

Name: NF2158_high_8
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_high_8
NF2158_high_8
[»] chr2 (4 HSPs)
chr2 (1-345)||(2892250-2892613)
chr2 (586-754)||(2892821-2892989)
chr2 (406-561)||(2892668-2892823)
chr2 (12-99)||(37881310-37881397)
[»] chr4 (4 HSPs)
chr4 (406-542)||(36245993-36246129)
chr4 (172-300)||(36246227-36246355)
chr4 (12-95)||(36246513-36246596)
chr4 (31-70)||(50777504-50777543)
[»] chr1 (1 HSPs)
chr1 (31-69)||(38707205-38707243)
[»] chr3 (1 HSPs)
chr3 (267-300)||(9231948-9231981)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2892250 - 2892613
Alignment:
Q  1 ttctcaaaagccttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892250 ttctcaaaagccttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataata 2892349  T
Q  101 -----ataaagtcgattgagtatgaacgaaagattcaaat----aaaataagttgaccaaactctat----------atatatactttacttacttgttg 181  Q
         ||| |||||||||||||| ||||||||||||||||    |||||||||||| |||||||||           ||| |||||||||||||||||||    
T  2892350 taatgatagagtcgattgagtatcaacgaaagattcaaattaataaaataagttgatcaaactctacgtacgtacacatagatactttacttacttgttg 2892449  T
Q  182 ccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaacggagacgac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892450 ccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaacggagacgac 2892549  T
Q  282 aacttttgccacatctttgcaaacctattaattcaatcaaaaattaataacaaaagaaaagaac 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892550 aacttttgccacatctttgcaaacctattaattcaatcaaaaattaataacaaaagaaaagaac 2892613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 586 - 754
Target Start/End: Original strand, 2892821 - 2892989
Alignment:
Q  586 cttctagctagttagttacgttgctcaaatagtaatggaggagaaaatagagaaacaaattagagggtccgtaatgggacgtagttgagacaaggttatg 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892821 cttctagctagttagttacgttgctcaaatagtaatggaggagaaaatagagaaacaaattagagggtccgtaatgggacgtagttgagacaaggttatg 2892920  T
Q  686 gtataaatagaaaggaagatggtgaaaagtgtgtgattggaagtcaaatggattcggtgccgccctttg 754  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2892921 gtataaatagaaaggaagatggtgaaaagtgtgtgattggaagtcaaatggattcggtgccgtcctttg 2892989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 406 - 561
Target Start/End: Original strand, 2892668 - 2892823
Alignment:
Q  406 ccagcattctttgggagtgtcctccaattgccataaccatgtttctgaatgtaatcaatgagtttctgatcttcctcagttgtccatggtccttttttga 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892668 ccagcattctttgggagtgtcctccaattgccataaccatgtttctgaatgtaatcaatgagtttctgatcttcctcagttgtccatggtccttttttga 2892767  T
Q  506 gaccattattcttctcacaacaaggtgttcttcccatagcaaattatattgtgctt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892768 gaccattattcttctcacaacaaggtgttcttcccatagcaaattatattgtgctt 2892823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 37881310 - 37881397
Alignment:
Q  12 cttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataat 99  Q
    |||||||||||||| |||||||| ||||| |||||||||||||| || ||||| ||||||| ||  || || ||||||||||||||||    
T  37881310 cttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcagaccacctataat 37881397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 406 - 542
Target Start/End: Complemental strand, 36246129 - 36245993
Alignment:
Q  406 ccagcattctttgggagtgtcctccaattgccataaccatgtttctgaatgtaatcaatgagtttctgatcttcctcagttgtccatggtccttttttga 505  Q
    ||||||||||||||||||   ||||| ||||||||||||||||| ||||| ||||| || ||||| || ||||||||   ||||||||||||| ||||||    
T  36246129 ccagcattctttgggagtaatctccagttgccataaccatgtttttgaatataatctataagtttttggtcttcctcttgtgtccatggtcctcttttga 36246030  T
Q  506 gaccattattcttctcacaacaaggtgttcttcccat 542  Q
    | ||||||||||| ||||||||||||| |||||||||    
T  36246029 ggccattattcttttcacaacaaggtgctcttcccat 36245993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 36246355 - 36246227
Alignment:
Q  172 ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa 271  Q
    ||||||||||||||| |||||||| |||||||| || || ||||| |||||||| || || || || |  |||||||| |||||||||||||||||||||    
T  36246355 ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggtcggagatagtttgtccaa 36246256  T
Q  272 cggagacgacaacttttgccacatctttg 300  Q
    || ||||||||||| || |||||||||||    
T  36246255 cgtagacgacaactctttccacatctttg 36246227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 36246596 - 36246513
Alignment:
Q  12 cttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccaccta 95  Q
    |||||||||||||| ||||||||||| || || ||||||||||| || ||||||||||  | ||| ||||||| ||||||||||    
T  36246596 cttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagcctagaagcaattgaagaccaccta 36246513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 50777504 - 50777543
Alignment:
Q  31 tccaatagttttttatttcattgtccgtccttcctggtaa 70  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  50777504 tccaataattttttatttcattgtccgttcttcctggtaa 50777543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 38707243 - 38707205
Alignment:
Q  31 tccaatagttttttatttcattgtccgtccttcctggta 69  Q
    |||||||||||||||||||||||||||| || |||||||    
T  38707243 tccaatagttttttatttcattgtccgttctacctggta 38707205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 9231981 - 9231948
Alignment:
Q  267 tccaacggagacgacaacttttgccacatctttg 300  Q
    ||||||| ||||||||||||||||||||||||||    
T  9231981 tccaacgaagacgacaacttttgccacatctttg 9231948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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