View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_high_88 (Length: 250)

Name: NF2158_high_88
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_high_88
NF2158_high_88
[»] chr7 (3 HSPs)
chr7 (13-249)||(36362887-36363123)
chr7 (118-154)||(9979265-9979301)
chr7 (118-152)||(10704993-10705027)
[»] chr6 (3 HSPs)
chr6 (120-226)||(5040983-5041089)
chr6 (118-210)||(6766439-6766531)
chr6 (118-148)||(3731336-3731366)
[»] scaffold0299 (1 HSPs)
scaffold0299 (114-204)||(12756-12846)
[»] chr1 (1 HSPs)
chr1 (118-154)||(48129603-48129639)
[»] chr4 (1 HSPs)
chr4 (118-149)||(46798486-46798517)
[»] chr2 (2 HSPs)
chr2 (118-149)||(15671788-15671819)
chr2 (122-154)||(17569201-17569233)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 36362887 - 36363123
Alignment:
Q  13 aatatcaaaaccgactcaataattttgctagtaagtaagagcaagttttaaactatgaggtatcttttgtctacatatgtaatatttttatctataaaat 112  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36362887 aatatcaaaaccgactcaataattttgctagtaagtgagtgcaagttttaaactatgaggtatcttttgtctacatatgtaatatttttacctataaaat 36362986  T
Q  113 ctttattttaacaaaccaaaatgaattatattaacaaaaccaacgcaatcccctcttaacaagttatgccaaagagaccactaaatatacaaacagtcaa 212  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36362987 cttttttttaacaaaccaaaatgaattatattaacaaaaccaaagcaatcccctcttaacaaggtatgccaaagagaccactaaatatacaaacagtcaa 36363086  T
Q  213 ccaagtaacaacaccagtgttaatcgatacccaaaaa 249  Q
    |||||||||||||||||||||| ||||||||||||||    
T  36363087 ccaagtaacaacaccagtgttagtcgatacccaaaaa 36363123  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 9979301 - 9979265
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaaaacca 154  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9979301 ttttaacaagccaaaatgaattatattaacaaaacca 9979265  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 10705027 - 10704993
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaaaac 152  Q
    |||||||||| ||||||||||||||||||||||||    
T  10705027 ttttaacaaagcaaaatgaattatattaacaaaac 10704993  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 5040983 - 5041089
Alignment:
Q  120 ttaacaaaccaaaatgaattatattaacaaaaccaacgcaatcccctcttaacaagttatgccaaagagaccactaaatatacaaacagtcaaccaagta 219  Q
    |||||||  |||||||| |||||||||||||| ||| |||||||| ||   ||||    ||  ||||||||||||||||||||||||||||||||||  |    
T  5040983 ttaacaaggcaaaatgagttatattaacaaaatcaaagcaatcccttcagcacaaagcgtgttaaagagaccactaaatatacaaacagtcaaccaaaaa 5041082  T
Q  220 acaacac 226  Q
    |||||||    
T  5041083 acaacac 5041089  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 6766439 - 6766531
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaaaaccaacgcaatcccctcttaacaagttatgccaaagagaccactaaatatacaaacagtc 210  Q
    |||||||||| |||||||| |||||||||||||||||   ||||||| ||   |||||  ||||||||||||| |||||  |||||| |||||    
T  6766439 ttttaacaaatcaaaatgagttatattaacaaaaccacaacaatcccttcagcacaaggcatgccaaagagactactaagaatacaagcagtc 6766531  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 148
Target Start/End: Original strand, 3731336 - 3731366
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaaca 148  Q
    |||||||||||||||||||||||||||||||    
T  3731336 ttttaacaaaccaaaatgaattatattaaca 3731366  T

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Target: scaffold0299 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 12846 - 12756
Alignment:
Q  114 tttattttaacaaaccaaaatgaattatattaacaaaaccaacgcaatcccctcttaacaagttatgccaaagagaccactaaatatacaa 204  Q
    ||||||||||||| | |||||||||||||||||||||| ||   ||||||| ||   ||||| ||||| |||||||| |||||| ||||||    
T  12846 tttattttaacaagctaaaatgaattatattaacaaaatcacaacaatcccttcagcacaaggtatgctaaagagactactaaaaatacaa 12756  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 48129603 - 48129639
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaaaacca 154  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48129603 ttttaacaaactaaaatgaattatattaacaaaacca 48129639  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 46798517 - 46798486
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaa 149  Q
    ||||||||||||||||||||||||||||||||    
T  46798517 ttttaacaaaccaaaatgaattatattaacaa 46798486  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 15671819 - 15671788
Alignment:
Q  118 ttttaacaaaccaaaatgaattatattaacaa 149  Q
    ||||||||||||||||||||||||||||||||    
T  15671819 ttttaacaaaccaaaatgaattatattaacaa 15671788  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 17569233 - 17569201
Alignment:
Q  122 aacaaaccaaaatgaattatattaacaaaacca 154  Q
    ||||| |||||||||||||||||||||||||||    
T  17569233 aacaagccaaaatgaattatattaacaaaacca 17569201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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