View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_95 (Length: 238)
Name: NF2158_high_95
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_95 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 45552493 - 45552272
Alignment:
| Q |
17 |
atattcgatatatatgcttacacccacatacacgcacgcactgagtgaatgagtgagataacttggacgtcaatctttctcagttcttgatgacagatga |
116 |
Q |
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| T |
45552493 |
atattcgatatatatgcttacacccacatacacgcacgcactgagtgaatgagtgagataacttggacgtcaatctttctcagttcttgatgacagatga |
45552394 |
T |
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| Q |
117 |
cagacctcacccctcacccaactctgatagtaccctctcaaccattnnnnnnnttctcctcttctacgtcccggcaacacataatttccataaacatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45552393 |
cagacctcacccctcacccaactctgatagtaccctctcaaccattcccccccttctcctcttctacgtcccggcaccacataatttccataaacatttt |
45552294 |
T |
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| Q |
217 |
tccattttgtcacagtcactgc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
45552293 |
tccattttgtcacagtcactgc |
45552272 |
T |
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