View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_high_96 (Length: 238)
Name: NF2158_high_96
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_high_96 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 38714780 - 38714563
Alignment:
| Q |
20 |
ccttatttagtctattttctaacccacattgtttaattcccaattgacattaagtaaaagataagtgnnnnnnnnnctttctgtcgtcggattcaagcca |
119 |
Q |
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| T |
38714780 |
ccttatttagtctattttctaacccacattgtttaattcccaattgacattaagtaaaagataagtgtttttttt-ctttctgtcgtcggatgcaagcca |
38714682 |
T |
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| Q |
120 |
atgcnnnnnnncaataatttggtcaaactggtgggggtttaacaaataaaccatgaaactgtgaacaatgaatacattagactttttctctctaaaaatg |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38714681 |
atgcaaaaaaacaataatttggtcaaactggtgggggtttaacaaataaaccatgaaactgtgaacaatgaatacattagactttttctctctaaaaatg |
38714582 |
T |
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| Q |
220 |
atgttgtcttcatttactt |
238 |
Q |
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| T |
38714581 |
atgctgtcttcatttactt |
38714563 |
T |
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