View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_1 (Length: 1012)
Name: NF2158_low_1
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_1 |
 | |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 862; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 1 - 995
Target Start/End: Original strand, 46647106 - 46648105
Alignment:
| Q |
1 |
taaatgaatcaaagaacaaaagaaaaagtttaaaagcattaaaatggattataaagtcggaatcaaattcggacgttggattacatggctaaacagaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647106 |
taaatgaatcaaagaacaaaagaaaaagtttaaaagcattaaaatggattataaagtcggaatcaaattcggacgttggattacatggctaaacagaaca |
46647205 |
T |
|
| Q |
101 |
aaattggaaccatagatttgatgttggtggtgatgggttacatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647206 |
aaattggaaccatagatttgatgttggtggtggtgggttacatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttga |
46647305 |
T |
|
| Q |
201 |
gagactatgataaatgtgtgtttttaatttgatttagtggtcaaaagctcagccttgagaacctggatattcttctttcacaatgtttcattggaacgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46647306 |
gagactatgataaatgtgtgtttttaatttgatttagtggtcaaaagctcagccttgagaacctggatattcttctttcacaatgtttcattgaaacgta |
46647405 |
T |
|
| Q |
301 |
agtaagtgttcaaatcagtgacactcttagatatcaacaatgataatcttggtaaatatcttgttcctcttattcatgtggatcgtggaatatttagtga |
400 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
46647406 |
agtaagtgttcagatcagtgacactcttagatctcaacaatgataatcttggtaaatatcttgttcctcttattcatgtggatcgtggaacatttcgtga |
46647505 |
T |
|
| Q |
401 |
ggttcttaataaaaagatacatagtcatctcaacgctttgaaaagtaaacattcatnnnnnnnnnnnnnnnn--tatgtannnnnnnaaaggctaagaaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
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| T |
46647506 |
ggttcttaataaaaagatacatagtcatctcaacgctttgaaaagtaagcattcataaaataaaataaaaaaaatatgtatttttttaaaggctaagaaa |
46647605 |
T |
|
| Q |
499 |
aataattaataaaccaactaaagtccctgtagcacatgatgtatacgagaaacgtaacaatccgaaatgttacaacgaaccaggagaaaaattaagaaaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647606 |
aataattaataaaccaactaaagtccctatagcacatgatgtatacgagaaacttaacaatccgaaatgttacaacgaaccaggagaaaaattaagaaaa |
46647705 |
T |
|
| Q |
599 |
tatcgttaagcaagacgaagggttcagcctactatatgtgtgtgattaataacatgctaatgtttggttaattcaatttgttttgtggttaatgaattgt |
698 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647706 |
tgtcgttaagcaagacgaagggttcagcctactatatgtgtgtgattaataacatgctaatgtttggttaattcaatttgttttgtggttaatgaattgt |
46647805 |
T |
|
| Q |
699 |
caatttttatgggcagaattaattaacttaatctcattgttctaaaaattactcatggcattcaaataattggttgattaagttcattgtgtagttattg |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647806 |
caatttttatgggcagaattaattaacttaatctcattgttctaaaaattactcatggcattcaaataattggttgattaagttcattgtgtagttatta |
46647905 |
T |
|
| Q |
799 |
accactaattaat---tattttttagggaaattaaattgttaacccctttcaacacagtattaacgattaatatctagccaattaatcaatgtgcttcta |
895 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647906 |
accactaattaattagtattttttagggaaattaaattgttaacccctttcaacacagtattaacgattaatatctagccaattaatcaatgtgcttcta |
46648005 |
T |
|
| Q |
896 |
gacccttaatacaagtggttaatgtagtattgaagcagttcattaaccacataattaactgaattaaccaaatatttgcaactcattaaccatcacttct |
995 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46648006 |
gacccttaatacaagtggttaatgtagtattgaagcagttcattaaccacataattaactgaattaaccaaatatttgcaactcattaaccatcacttct |
46648105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 55514648 - 55514548
Alignment:
| Q |
141 |
catgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttgagagactatgataaatgtgtgtttttaatttgatttagtgg |
240 |
Q |
| |
|
|||||||||||||| | |||||||| || ||| ||||||| |||||||||||| ||||||||||| ||||||||||| | || |||||||||||||| |
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| T |
55514648 |
catgaaggagaaagga-tagtgttggaagatggtgtggaa----aataatatggtgatgagagactataataaatgtgtgctctttatttgatttagtgg |
55514554 |
T |
|
| Q |
241 |
tcaaaa |
246 |
Q |
| |
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| |||| |
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| T |
55514553 |
ttaaaa |
55514548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 26393919 - 26393953
Alignment:
| Q |
185 |
aataatatggtgttgagagactatgataaatgtgt |
219 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
26393919 |
aataatatggtgctgagagactatgataaatgtgt |
26393953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 13361757 - 13361679
Alignment:
| Q |
140 |
acatgaaggagaaagaaatagtgttgaaaaatgatgtggaataataataatatggtgttgagagactatgataaatgtgtgtt |
222 |
Q |
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||||||||||||||||| ||||||||||| ||| ||| ||| ||||||| | |||||||||||| |||||||||||||||| |
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| T |
13361757 |
acatgaaggagaaagaa-tagtgttgaaagatggtgtagaagaataata---tagtgttgagagaccatgataaatgtgtgtt |
13361679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 21853437 - 21853473
Alignment:
| Q |
185 |
aataatatggtgttgagagactatgataaatgtgtgt |
221 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
21853437 |
aataatatggtgctgagagactatgataaatgtgtgt |
21853473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 15846 - 15880
Alignment:
| Q |
185 |
aataatatggtgttgagagactatgataaatgtgt |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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|
| T |
15846 |
aataatatggtgctgagagactatgataaatgtgt |
15880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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