View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_104 (Length: 236)

Name: NF2158_low_104
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_104
NF2158_low_104
[»] chr4 (4 HSPs)
chr4 (7-236)||(45680165-45680394)
chr4 (83-177)||(9831386-9831480)
chr4 (77-145)||(11131184-11131252)
chr4 (188-236)||(13157374-13157422)
[»] chr5 (8 HSPs)
chr5 (79-236)||(39059074-39059231)
chr5 (153-236)||(22564244-22564327)
chr5 (83-145)||(16610602-16610664)
chr5 (188-236)||(15773109-15773157)
chr5 (68-146)||(12831501-12831579)
chr5 (68-146)||(12863476-12863554)
chr5 (86-168)||(18967864-18967946)
chr5 (130-171)||(14920829-14920870)
[»] chr1 (10 HSPs)
chr1 (47-236)||(25529986-25530177)
chr1 (95-181)||(3973981-3974066)
chr1 (60-236)||(22583170-22583346)
chr1 (67-236)||(31069588-31069757)
chr1 (7-101)||(3973639-3973735)
chr1 (87-236)||(9484788-9484937)
chr1 (83-180)||(44675094-44675191)
chr1 (86-145)||(26260785-26260844)
chr1 (87-145)||(27568417-27568475)
chr1 (77-145)||(28442142-28442210)
[»] chr7 (2 HSPs)
chr7 (60-236)||(12092619-12092795)
chr7 (59-146)||(26569740-26569827)
[»] chr3 (5 HSPs)
chr3 (20-156)||(11586917-11587052)
chr3 (73-118)||(43797308-43797353)
chr3 (130-236)||(14760305-14760411)
chr3 (77-146)||(42806286-42806355)
chr3 (77-145)||(22534037-22534105)
[»] chr6 (3 HSPs)
chr6 (83-145)||(11324501-11324563)
chr6 (86-167)||(12187520-12187601)
chr6 (83-176)||(12688190-12688283)
[»] chr2 (4 HSPs)
chr2 (186-236)||(38332152-38332202)
chr2 (83-180)||(31640238-31640335)
chr2 (83-123)||(8090524-8090564)
chr2 (86-146)||(45131132-45131192)
[»] chr8 (4 HSPs)
chr8 (87-146)||(8462520-8462579)
chr8 (201-236)||(16345792-16345827)
chr8 (60-164)||(10183443-10183547)
chr8 (188-236)||(39435561-39435609)
[»] scaffold0171 (1 HSPs)
scaffold0171 (188-236)||(8624-8672)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 45680165 - 45680394
Alignment:
Q  7 aatatgtacaaactaaaaacgaaagcaccaaataccaaaaagaaagaaaccgaactagctaatgcacaacaaagttaacggactaagccaccacccatga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  45680165 aatatgtacaaactaaaaacgaaagcaccaaataccaaaaagaaagaaacagaactagctaatgcccaacaaagttaacggactaaaccaccacccatga 45680264  T
Q  107 aaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccacttgtgagctggagcattcttttgcattga 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45680265 aaatttaatggaagagagacaattttcgccttcaaccacacataggaaagagccttaatcttatccaccacttgtgagatggagcattcttttgcattga 45680364  T
Q  207 agatcatgttgtttctttctttccaaattt 236  Q
    ||||||| ||||||||||||||||||||||    
T  45680365 agatcattttgtttctttctttccaaattt 45680394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 9831480 - 9831386
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccac 177  Q
    ||||||||||||||||| |||||| |||| || ||||| |  || | ||||||||||||||||  | | | ||||| ||| ||||||||||||||    
T  9831480 aacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccac 9831386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 11131184 - 11131252
Alignment:
Q  77 aaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    ||||| || |||||||||||||| |||||| |||| || ||||||| |||||  ||| |||||||||||    
T  11131184 aaagtaaaaggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccac 11131252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 13157422 - 13157374
Alignment:
Q  188 gagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    |||| |||||||||||| || ||| ||||||||||||||||||| ||||    
T  13157422 gagctttcttttgcattaaaaatcttgttgtttctttctttccatattt 13157374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 39059231 - 39059074
Alignment:
Q  79 agttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccact 178  Q
    |||||| | ||||||  |||| ||||| ||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  39059231 agttaaagaactaagttaccatccatgtaaatttaatggaagagagataaatttccccttcaaccactcataggaaagagccttaatcttatcaaccact 39059132  T
Q  179 tgtgagctggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||| |  ||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  39059131 tgtaaaatggagcactcttttgcattgaaaatcttgttgtttctttctttccaaattt 39059074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 22564327 - 22564244
Alignment:
Q  153 aaagagccttaatcttatccaccacttgtgagctggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||||| ||||||| ||||| ||||||||| |  |||| || |||||||||||||||||| ||||||||||||||||||||||||    
T  22564327 aaagaaccttaatgttatcaaccacttgtaaaatggaacactcttttgcattgaagatcttgttgtttctttctttccaaattt 22564244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 16610664 - 16610602
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    |||||||||||||||||||||||| |||| || |||||||| ||||  |||| ||||||||||    
T  16610664 aacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 15773157 - 15773109
Alignment:
Q  188 gagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    |||||||||||  |||| ||||||||||| |||||||||||||||||||    
T  15773157 gagcattctttaccattaaagatcatgttatttctttctttccaaattt 15773109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 12831501 - 12831579
Alignment:
Q  68 atgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||| || ||||| | |  || |||| ||||||||||||    
T  12831501 atgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccaca 12831579  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 12863476 - 12863554
Alignment:
Q  68 atgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||| || ||||| | |  || |||| ||||||||||||    
T  12863476 atgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccaca 12863554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 18967946 - 18967864
Alignment:
Q  86 ggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatctt 168  Q
    ||||||||||| || ||||||  ||| |||||||||||  ||| ||||||||||||||||| | | ||||| | |||||||||    
T  18967946 ggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgacttaatctt 18967864  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 14920829 - 14920870
Alignment:
Q  130 tttcgccttcaaccacacataggaaagagccttaatcttatc 171  Q
    ||||||||||||||||||| | ||||||| ||||||||||||    
T  14920829 tttcgccttcaaccacacaaaagaaagagacttaatcttatc 14920870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 25530177 - 25529986
Alignment:
Q  47 agaaagaaaccgaactagctaatgcacaacaaagttaacggactaa-gccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    ||||||||| |  ||||||  |||| ||||||||| || ||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  25530177 agaaagaaaacctactagccgatgcccaacaaagtaaatggactaaagccaccactcatgaaaatttaatggaagagaggcaaatttcgccttcaaccac 25530078  T
Q  146 acataggaaagagccttaatcttatccaccacttgtgagctggagcattc-ttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    |||  |||||| | ||||||||||||||||| |||| |  |||||||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  25530077 acaatggaaagtgacttaatcttatccaccaattgtaatatggagcattctttttaaattgaatatcatgttgtttctttctttccaaattt 25529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 3973981 - 3974066
Alignment:
Q  95 caccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccacttgt 181  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3973981 caccacccatgaaaatttaatgaaagagagacaa-tttcgccttcaaccacacataggaaagagccttaatcttatctaccacttgt 3974066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 22583170 - 22583346
Alignment:
Q  60 actagctaatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagc 159  Q
    |||||| ||||| ||||| ||| || |||||||||||||| | ||   | ||||| ||||||||| ||| |||||||||||||||||   ||||||| |     
T  22583170 actagcaaatgcccaacatagtaaatggactaagccaccatctatactagtttaagggaagagaggcaaatttcgccttcaaccacatgaaggaaagtga 22583269  T
Q  160 cttaatcttatccaccacttgtgagctggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||| |||||||| ||||| ||| |  | |||||||||||  ||||||| ||  ||||||||||||| ||||||||||    
T  22583270 cttcatcttatctaccacctgtaacatcgagcattctttatcattgaatattttgttgtttctttccttccaaattt 22583346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 31069757 - 31069588
Alignment:
Q  67 aatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatc 166  Q
    ||||| ||||| ||| |||||| ||| | |||| |||||| ||||||||||||||||| ||| |||||||||||||||||   ||||||  | |||||||    
T  31069757 aatgctcaacatagtaaacggattaaactaccatccatgataatttaatggaagagaggcaaatttcgccttcaaccacatgaaggaaaatgacttaatc 31069658  T
Q  167 ttatccaccacttgtgagctggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    || || ||||| ||| |  | |||  ||||||  |||| || | |||||| | |||||||||||||||||    
T  31069657 ttgtctaccacctgtaatattgagacttctttaccattaaataacatgttatatctttctttccaaattt 31069588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 3973639 - 3973735
Alignment:
Q  7 aatatgtacaaactaaaaa-cgaaagcaccaaataccaa-aaagaaagaaaccgaactagctaatgcacaacaaagttaacggactaagccaccacc 101  Q
    |||||||| |||||||||| || |||||||||||||||| |||||||||||  |||||||||| ||  |||||||||||| ||||||| | ||||||    
T  3973639 aatatgtagaaactaaaaaacgtaagcaccaaataccaagaaagaaagaaatggaactagctagtgtccaacaaagttaatggactaaactaccacc 3973735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 9484937 - 9484788
Alignment:
Q  87 gactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccacttgtgagct 186  Q
    |||||| |||||| |||||| |||| || |||||||| |||| |||||||||||||||||   ||||||  | |||||||||||| || | |||  |  |    
T  9484937 gactaaaccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccacaagaaggaaattgacttaatcttatctactatttgcaatat 9484838  T
Q  187 ggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
     || ||||||||  ||||||| ||| |||| ||||||||||| |||||||    
T  9484837 cgaacattctttaccattgaatatcttgttatttctttcttttcaaattt 9484788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 44675191 - 44675094
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccacttg 180  Q
    ||||||||||||||||| |||||| |||| || ||||| ||  ||| |||||||||||||||||   | | ||| | |||||||||||| ||||||||    
T  44675191 aacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatcttatcaaccacttg 44675094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 26260844 - 26260785
Alignment:
Q  86 ggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    ||||||||||||||||||||| |||| || ||||||||  |||  |||||||||||||||    
T  26260844 ggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac 26260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 27568475 - 27568417
Alignment:
Q  87 gactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    |||||||||||||||||||  |||| || |||||||| |||| ||| ||||||||||||    
T  27568475 gactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccac 27568417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 28442142 - 28442210
Alignment:
Q  77 aaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    ||||| || |||||||||||||| |||||| | || || |||||||||||||  ||| |||||||||||    
T  28442142 aaagtaaatggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccac 28442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 12092795 - 12092619
Alignment:
Q  60 actagctaatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagc 159  Q
    |||||||||||| ||||| ||| || |||||||||||| | |||||| | ||||| |||||||||  || |||||||||||||||||   ||||||| |     
T  12092795 actagctaatgcccaacatagtaaatggactaagccactatccatgatagtttaagggaagagaggaaaatttcgccttcaaccacatgaaggaaagtga 12092696  T
Q  160 cttaatcttatccaccacttgtgagctggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    |||||||||||| ||||| ||| || | ||||||||||| |||||||| ||  |||| |||| ||| ||||||||||    
T  12092695 cttaatcttatctaccacctgtaagatcgagcattctttagcattgaatattctgttatttccttccttccaaattt 12092619  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 26569827 - 26569740
Alignment:
Q  59 aactagctaatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    ||||||| ||||| ||||| ||| |||||||  |||||||| |||||| |||| || ||||||||  ||| |||||||||||||||||    
T  26569827 aactagccaatgcccaacatagtgaacggacatagccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccaca 26569740  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 11586917 - 11587052
Alignment:
Q  20 taaaaacgaaagcaccaaataccaaaaagaaagaaaccgaactagctaatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaa 119  Q
    ||||||||||| ||||||| | | || ||| ||||||  |||||  || ||| |||||||||||| ||||||||||||||||||||||||||||||  ||    
T  11586917 taaaaacgaaaacaccaaagaactaacagagagaaaca-aactaattagtgctcaacaaagttaatggactaagccaccacccatgaaaatttaataaaa 11587015  T
Q  120 gagagacaactttcgccttcaaccacacataggaaag 156  Q
    ||||| | | ||| |||||||||||| ||||||||||    
T  11587016 gagaggctaattttgccttcaaccactcataggaaag 11587052  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 43797308 - 43797353
Alignment:
Q  73 caacaaagttaacggactaagccaccacccatgaaaatttaatgga 118  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  43797308 caacaaagttaatggactaagctaccacccatgaaaatttaatgga 43797353  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 14760305 - 14760411
Alignment:
Q  130 tttcgccttcaaccacacataggaaagagccttaatcttatccacca-cttgtgagctggagcattcttttgcattgaagatcatgttgtttctttcttt 228  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||||||| ||  ||||   |||||||| ||  |||| |||||| |||| |||||||||||    
T  14760305 tttcgccttcaaccacacaaaagaaagagacttaatcttgtccaccagctgatgag-acgagcattcattgccattaaagatcctgttctttctttcttt 14760403  T
Q  229 ccaaattt 236  Q
    ||||||||    
T  14760404 ccaaattt 14760411  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 42806286 - 42806355
Alignment:
Q  77 aaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    ||||| || ||||||||||||||||||||| | || || ||||||| |||||  ||| ||||||||||||    
T  42806286 aaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccaca 42806355  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 22534105 - 22534037
Alignment:
Q  77 aaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    ||||| || ||||||||||||||||||||| | || || ||||||| |||||  ||| |||||||||||    
T  22534105 aaagtaaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccac 22534037  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 11324563 - 11324501
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccac 145  Q
    |||||||||||||||||||||||| |||| || ||||||||  ||| ||||||||||||||||    
T  11324563 aacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccac 11324501  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 12187520 - 12187601
Alignment:
Q  86 ggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatct 167  Q
    ||||||||| || | ||||||||||| || | ||||||||||| ||||||||||||||||  | |||||||| |||||||||    
T  12187520 ggactaagcaacaaaccatgaaaattaaacgaaagagagacaagtttcgccttcaaccacgtaaaggaaagaaccttaatct 12187601  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 12688283 - 12688190
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccacca 176  Q
    ||||||||||||||||| ||||| ||||| || |||||||    || |||| |||||||||||||| | |  || | |||||||||||||||||    
T  12688283 aacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccacacaaatgtgagggacttaatcttatccacca 12688190  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 38332152 - 38332202
Alignment:
Q  186 tggagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  38332152 tggagcattctttagcattaaaaatcatgttgtttctttctttccaaattt 38332202  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 31640335 - 31640238
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagccttaatcttatccaccacttg 180  Q
    ||||||||||||||||| |||||  |||| |  ||||||||  ||| ||||||||||||||||  | | | ||| | |||||||||||| ||||||||    
T  31640335 aacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgacttaatcttatctaccacttg 31640238  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 8090564 - 8090524
Alignment:
Q  83 aacggactaagccaccacccatgaaaatttaatggaagaga 123  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  8090564 aacggactaagccaccacccatgataattgaagggaagaga 8090524  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 45131132 - 45131192
Alignment:
Q  86 ggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    ||||||||||||||||||||| |||| || ||||||||  ||  |||| ||||||||||||    
T  45131132 ggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccaca 45131192  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 8462520 - 8462579
Alignment:
Q  87 gactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccaca 146  Q
    ||||||||||||| |||||| |||| || ||||||||  ||| |||||||||||||||||    
T  8462520 gactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccaca 8462579  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 16345792 - 16345827
Alignment:
Q  201 cattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16345792 cattgaagatcttgttgtttctttctttccaaattt 16345827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 10183547 - 10183443
Alignment:
Q  60 actagctaatgcacaacaaagttaacggactaagccaccacccatgaaaatttaatggaagagagacaactttcgccttcaaccacacataggaaagagc 159  Q
    |||||| ||| | ||||| ||| || |||||||||||||| |||| | | ||||| |||| |||| ||| ||||||||| |||||||   |||||||||     
T  10183547 actagccaatacccaacatagtaaatggactaagccaccatccattatagtttaagggaaaagaggcaaatttcgcctttaaccacatgaaggaaagaga 10183448  T
Q  160 cttaa 164  Q
    |||||    
T  10183447 cttaa 10183443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 39435561 - 39435609
Alignment:
Q  188 gagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||    
T  39435561 gagcattctttgtcattgaataacatgttatttctttctttccaaattt 39435609  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 8624 - 8672
Alignment:
Q  188 gagcattcttttgcattgaagatcatgttgtttctttctttccaaattt 236  Q
    ||||| ||||| |||||||| ||| | ||||||||||||||||||||||    
T  8624 gagcaatctttagcattgaatatctttttgtttctttctttccaaattt 8672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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