View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_low_107 (Length: 215)
Name: NF2158_low_107
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_107 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 38029262 - 38029471
Alignment:
| Q |
9 |
acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacat---------attttgttcggattgttaaacggacttcgttccg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
38029262 |
acatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacatatggtacatattttgttcggattgttaaacggacttccttcta |
38029361 |
T |
|
| Q |
100 |
actctcaaaaagttagctcaaataatgaaaacggtaaatacatataagtggaaggtgtccaagtacatatgaacattacactaatatcgcgttaaataga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
38029362 |
actctcaaaaagttagctcaaataatgaaagcggtaaatacatataagaggaaggtgtccaagtacatatgaacattacactaatattgccttaaatgaa |
38029461 |
T |
|
| Q |
200 |
atttgatctc |
209 |
Q |
| |
|
||| |||||| |
|
|
| T |
38029462 |
attggatctc |
38029471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 38029478 - 38029523
Alignment:
| Q |
107 |
aaaagttagctcaaataatgaaaacggtaaatacatataagtggaa |
152 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
38029478 |
aaaagttagctcaaataatgaaagcggtaaatgcatataagaggaa |
38029523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University