View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_11 (Length: 595)
Name: NF2158_low_11
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 41479999 - 41479415
Alignment:
| Q |
1 |
tgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgataccaatttaaaagaaaggattcc |
100 |
Q |
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| T |
41479999 |
tgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgataccaatttaaaagaaaggattcc |
41479900 |
T |
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| Q |
101 |
agaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtggacttaaagtcttctaaatgc |
200 |
Q |
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| T |
41479899 |
agaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtggacttaaagtcttctaaatgc |
41479800 |
T |
|
| Q |
201 |
ttctctgaagagtccaataagtaaatcaaccccgttgtaaacttcatccacacgaaagttgagttcaactactgatannnnnnnnnatcttaagtagttc |
300 |
Q |
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| T |
41479799 |
ttctctgaagagtccaataagtaaatcaaccccgttgtaaacttcatccacacgaaagttgagttcaactactgat--ttttttttatcttaagtagttc |
41479702 |
T |
|
| Q |
301 |
aatacgaatttctcctataagcgacgaagggctcgtgagggaacagtttccttctc--agagaatggtagttgccacactaatgtctgaagatctttctt |
398 |
Q |
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| T |
41479701 |
aatacgaatttctcctataagcgacgaagggctcgcgagggaacagtttccttctcaaagagaatggtagtcgccacactaatgtctgaagatctttctt |
41479602 |
T |
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| Q |
399 |
gaagctaatttttaaaaatacagttcaaactaatgatttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggta |
498 |
Q |
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| T |
41479601 |
gaagctaatttttaaaaatacagttcaaactaatgatttcttattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggta |
41479502 |
T |
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| Q |
499 |
cgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccacatgcctttg |
585 |
Q |
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| T |
41479501 |
tgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccaaactacaaagagagacaattgataccacatgcctttg |
41479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 493 - 576
Target Start/End: Complemental strand, 41487528 - 41487445
Alignment:
| Q |
493 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccac |
576 |
Q |
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| T |
41487528 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagacgattgataccac |
41487445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 576
Target Start/End: Complemental strand, 41486677 - 41486578
Alignment:
| Q |
470 |
atataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactac-aaagagagacaatt |
568 |
Q |
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| T |
41486677 |
atataatgctttatttttaggttcaggtacgatttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaatt |
41486586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 548
Target Start/End: Complemental strand, 40753830 - 40753788
Alignment:
| Q |
506 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaacca |
548 |
Q |
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| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaacca |
40753788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 41472428 - 41472357
Alignment:
| Q |
287 |
atcttaagtagttcaatacgaatttctcctataa-gcgacgaagggctcgtgagggaacagtttccttctca |
357 |
Q |
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| T |
41472428 |
atctaaagtagtacactacgaatttctcctataatgtgacgaaggtctggcgagggaacaatttccttctca |
41472357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 357
Target Start/End: Original strand, 16406879 - 16407054
Alignment:
| Q |
180 |
gacttaaagtcttctaaatgcttctctgaaga---gtccaataagtaaatcaaccccgttgtaaacttcatccacacgaaagttgagttcaactactgat |
276 |
Q |
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||||||||| |||| |||||||||||||||| ||||| |||||||||||| || | |||| | ||| ||||||||||||||||||| ||||||| |
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| T |
16406879 |
gacttaaagctttcttaatgcttctctgaagaagagtccagtaagtaaatcaagcctgctgtagatttcgtccacacgaaagttgagtt---ctactga- |
16406974 |
T |
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| Q |
277 |
annnnnnnnnatcttaagtagttcaatacgaatttctcctat-aagcgacgaagggctcgtgagggaacagtttccttctca |
357 |
Q |
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|||| |||||||||| |||||||||||||||| | | |||||||| || ||||||||||| ||||||||||| |
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| T |
16406975 |
--atttttttatctaaagtagttcactacgaatttctcctatgatgtgacgaaggtctggtgagggaacaatttccttctca |
16407054 |
T |
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