View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_14 (Length: 565)
Name: NF2158_low_14
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 35656733 - 35657286
Alignment:
| Q |
1 |
ataatccttcacaacttaccgtacatgttgtgccagataaacgacgacaataatctttctaatgcaactctttgttctcaagtccacaaactatgacacg |
100 |
Q |
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| T |
35656733 |
ataatccttcacaacttaccgcacatgttgtgccagataaacgacgacaataacctttctaatgcaactctttgttcttaagtccacaaactatgacacg |
35656832 |
T |
|
| Q |
101 |
ccaaacaacattcacatttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgctatcaa |
200 |
Q |
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| T |
35656833 |
ccaaacaacattcacatttcaacctgctgcaccaccgagattaaactgaattcatattatctgataatatcatgagatacgatatctcaatcgttatcaa |
35656932 |
T |
|
| Q |
201 |
cgaacacacctctttattgca-------------attaaatacttgagaatatgaaataatacaatgaaactaaagatat------aatgtgatagactg |
281 |
Q |
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| T |
35656933 |
cgaacacacctctttattgcaagtaaaaatgttcattaaataagagggactatgaaataattcaataaaattaaagatattttatcaatgtgatagaccg |
35657032 |
T |
|
| Q |
282 |
tctaatctagatcgaacgacctcaaatatcccaagtttgcgtggaatattattgaatgtacgtgagtcggtgagtcggtccattgtttttatccaatgta |
381 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35657033 |
tataatctagatcgaacgacctcagatatcccaagtttgcgtgaaatattattgaatgtac--------gtgagtcggtccattgtttttatccaatgta |
35657124 |
T |
|
| Q |
382 |
gcttacaccatatccaactattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacag--aatagttcatgcggaatcattatcttcatc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
35657125 |
gcttacaccatatccaactattttgttgctgcacagcattagcatagcgcatgagaaaacctgaacagtaaatagttcatgcggaatcatcatcttcatc |
35657224 |
T |
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| Q |
480 |
gctctctctttcttcgatccccaaattctgcgaactgcgaaccctaatttcacatttcttcg |
541 |
Q |
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| T |
35657225 |
actctctctttcttcgatccccaaattctgcgaactgcgaaccctaatttcacatttcttcg |
35657286 |
T |
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