View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_15 (Length: 556)

Name: NF2158_low_15
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_15
NF2158_low_15
[»] chr7 (10 HSPs)
chr7 (321-533)||(7483088-7483300)
chr7 (22-245)||(7482812-7483033)
chr7 (39-152)||(7489422-7489533)
chr7 (426-519)||(7490015-7490107)
chr7 (343-375)||(10242469-10242501)
chr7 (347-390)||(27993056-27993098)
chr7 (345-375)||(28200426-28200456)
chr7 (349-390)||(34722048-34722088)
chr7 (346-390)||(46220977-46221020)
chr7 (354-390)||(48007574-48007609)
[»] chr4 (7 HSPs)
chr4 (349-390)||(40070995-40071035)
chr4 (340-390)||(37463507-37463556)
chr4 (348-377)||(5534503-5534532)
chr4 (353-390)||(32923257-32923293)
chr4 (354-390)||(31604320-31604355)
chr4 (346-390)||(32430150-32430193)
chr4 (339-375)||(50431388-50431424)
[»] chr5 (4 HSPs)
chr5 (349-392)||(10032299-10032341)
chr5 (353-390)||(18589894-18589930)
chr5 (353-390)||(26034635-26034671)
chr5 (349-390)||(41650966-41651006)
[»] chr8 (1 HSPs)
chr8 (348-390)||(35103099-35103140)
[»] chr3 (6 HSPs)
chr3 (348-390)||(47377376-47377417)
chr3 (353-390)||(5941321-5941357)
chr3 (353-390)||(8942015-8942051)
chr3 (353-390)||(28244131-28244167)
chr3 (343-375)||(7738657-7738689)
chr3 (354-390)||(22486682-22486717)
[»] chr2 (4 HSPs)
chr2 (348-390)||(5676732-5676773)
chr2 (349-390)||(21497661-21497701)
chr2 (350-390)||(33966316-33966355)
chr2 (354-390)||(35727436-35727471)
[»] chr1 (6 HSPs)
chr1 (346-388)||(6423791-6423832)
chr1 (348-390)||(7550889-7550930)
chr1 (344-390)||(39452449-39452494)
chr1 (341-390)||(14983475-14983523)
chr1 (353-390)||(27853353-27853389)
chr1 (353-390)||(50849100-50849136)
[»] scaffold0008 (1 HSPs)
scaffold0008 (349-390)||(122885-122925)
[»] chr6 (2 HSPs)
chr6 (353-390)||(28951397-28951433)
chr6 (347-375)||(7885533-7885561)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 321 - 533
Target Start/End: Original strand, 7483088 - 7483300
Alignment:
Q  321 ctaacatgccattaaacgattaaaatttgtcatcgtgagcttaactcagttggtaatgaacaatgcataacacaaaacaaatttattggaagattgatac 420  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||     
T  7483088 ctaacatgccattaaacgattgaaatttgtcctcgtgagcttagctcagttgataatggacaatgcataacacaaaacaaatttatgggaagattgatat 7483187  T
Q  421 gtacccaactaaatttcagagcatcggagtgtttgcttatattattttttaaatctaccaaaaaaccttttgcaacacaaattacacaattaaatgaatt 520  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7483188 gtacccaactaaatttccgagtatcggagtgtttgcttatattattttttaaatctaccaaaaaaccttttgcaacacaaattacacaattaaatgaatt 7483287  T
Q  521 tgaatttatatct 533  Q
    |  ||||||||||    
T  7483288 tatatttatatct 7483300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 7482812 - 7483033
Alignment:
Q  22 tggctcgattgaagacagggagggcatgaagatatcctttacttggagtttggttgagcattcgttagtaacaaaatcatgactctagtctaagaggttc 121  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||    
T  7482812 tggctcgattgaatagagggagggcatgaagacatcctttgcttggagtttggttgag--ttcgttaataacagaatcatgactctagtctaagaagttc 7482909  T
Q  122 aaacttttgagttcttcgatcttttgagttattgatgtaaaaacaaattcaggggtttaaaagacaaaatatatgggtatatttgcactaagttcagggg 221  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  7482910 aaacttttgagttctacgatcttttgagttaatgatgtaaaaataaattcaggggtttaaaacacaaaatatatgggtatatttgcaccaagttcagggg 7483009  T
Q  222 ttcaattgaacctggtatcaaaac 245  Q
    ||||||||||||||||||||||||    
T  7483010 ttcaattgaacctggtatcaaaac 7483033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 7489422 - 7489533
Alignment:
Q  39 gggagggcatgaagatatcctttacttggagtttggttgagcattcgttagtaacaaaatcatgactctagtctaagaggttcaaacttttgagttcttc 138  Q
    ||||||||||||||| | ||||||||||||||||| || || |||||||||| | | |  || ||  ||||| |||| |||| ||||||||||||||||     
T  7489422 gggagggcatgaagacaccctttacttggagtttgatttagtattcgttagtgagagaggcaaga--ctagtttaaggggttgaaacttttgagttcttg 7489519  T
Q  139 gatcttttgagtta 152  Q
    ||||| ||||||||    
T  7489520 gatctcttgagtta 7489533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 519
Target Start/End: Original strand, 7490015 - 7490107
Alignment:
Q  426 caactaaatttcagagcatcggagtgtttgcttatattattttttaaatctaccaaaaaaccttttgcaacacaaattacacaattaaatgaat 519  Q
    ||||||||||||| || ||| |||||||||| ||||||| ||||||||||  |||||| | || |||||| |||||||| | ||||||||||||    
T  7490015 caactaaatttcaaagtatcagagtgtttgcctatattaatttttaaatcggccaaaagagctcttgcaa-acaaattaaataattaaatgaat 7490107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 10242469 - 10242501
Alignment:
Q  343 aaatttgtcatcgtgagcttaactcagttggta 375  Q
    |||||||||||||||||||||||||||||||||    
T  10242469 aaatttgtcatcgtgagcttaactcagttggta 10242501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 27993098 - 27993056
Alignment:
Q  347 ttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  27993098 ttgtcctcgtgagcttaactcagttggt-atgaacaatgcataa 27993056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 28200456 - 28200426
Alignment:
Q  345 atttgtcatcgtgagcttaactcagttggta 375  Q
    |||||||||||||||||||||||||||||||    
T  28200456 atttgtcatcgtgagcttaactcagttggta 28200426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 34722088 - 34722048
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  34722088 gtcattgtgagcttaactcagttggt-atgaacaatgcataa 34722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 46221020 - 46220977
Alignment:
Q  346 tttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||    
T  46221020 tttgtcttcgtgagcttaactcagttggt-atggacaatgcataa 46220977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 48007609 - 48007574
Alignment:
Q  354 cgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48007609 cgtgagcttaactcagttggtaatg-acaatgcataa 48007574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 40071035 - 40070995
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  40071035 gtcatcgtgagcttaactcagttggt-atgaacaatgcataa 40070995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 37463507 - 37463556
Alignment:
Q  340 ttaaaatttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||| ||||||||||||||||||| ||| |||||| |||||||||||||||    
T  37463507 ttaatatttgtcatcgtgagcttagctcggttggt-atgaacaatgcataa 37463556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 5534503 - 5534532
Alignment:
Q  348 tgtcatcgtgagcttaactcagttggtaat 377  Q
    ||||||||||||||||||||||||||||||    
T  5534503 tgtcatcgtgagcttaactcagttggtaat 5534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 32923293 - 32923257
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  32923293 tcgtgagcttaactcagttggt-atgaacaatgcataa 32923257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 31604355 - 31604320
Alignment:
Q  354 cgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31604355 cgtgagcttaactcagttggtaa-gaacaatgcataa 31604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 32430193 - 32430150
Alignment:
Q  346 tttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||| ||||||||||||||||||| || |||||||||||||||    
T  32430193 tttgtcctcgtgagcttaactcagttagt-atgaacaatgcataa 32430150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 50431388 - 50431424
Alignment:
Q  339 attaaaatttgtcatcgtgagcttaactcagttggta 375  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  50431388 attaaaatttgtcctcgtgagcttagctcagttggta 50431424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 10032341 - 10032299
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataaca 392  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  10032341 gtcatcgtgagcttaactcagttggt-atggacaatgcataaca 10032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 18589930 - 18589894
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18589930 tcgtgagcttaactcagttggt-atgaacaatgcataa 18589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 26034671 - 26034635
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26034671 tcgtgagcttaactcagttggt-atgaacaatgcataa 26034635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 41651006 - 41650966
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  41651006 gtcatcgtgagcttaactcagttggt-atggacaatgcataa 41650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 35103099 - 35103140
Alignment:
Q  348 tgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  35103099 tgtcatcgtgagcttagctcagttggt-atgaacaatgcataa 35103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 47377417 - 47377376
Alignment:
Q  348 tgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  47377417 tgtcatcgtgagcttaactcagttggtaa-ggacaatgcataa 47377376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 5941357 - 5941321
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5941357 tcgtgagcttaactcagttggt-atgaacaatgcataa 5941321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 8942015 - 8942051
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8942015 tcgtgagcttaactcagttggt-atgaacaatgcataa 8942051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 28244167 - 28244131
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28244167 tcgtgagcttaactcagttggt-atgaacaatgcataa 28244131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 7738657 - 7738689
Alignment:
Q  343 aaatttgtcatcgtgagcttaactcagttggta 375  Q
    ||||||||| |||||||||||||||||||||||    
T  7738657 aaatttgtcctcgtgagcttaactcagttggta 7738689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 22486682 - 22486717
Alignment:
Q  354 cgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||| |||||||||||||    
T  22486682 cgtgagcttaactcagttggtaa-gaacaatgcataa 22486717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 5676732 - 5676773
Alignment:
Q  348 tgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  5676732 tgtcctcgtgagcttaactcagttggtaatg-acaatgcataa 5676773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 21497661 - 21497701
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  21497661 gtcatcgtgagcttaactcggttggtaa-gaacaatgcataa 21497701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 33966316 - 33966355
Alignment:
Q  350 tcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  33966316 tcatcgtgaacttaactcagttggt-atgaacaatgcataa 33966355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 35727436 - 35727471
Alignment:
Q  354 cgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35727436 cgtgagcttaactcagttggtaa-gaacaatgcataa 35727471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 6423832 - 6423791
Alignment:
Q  346 tttgtcatcgtgagcttaactcagttggtaatgaacaatgcat 388  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  6423832 tttgtcctcgtgagcttaactcagttggt-atgaacaatgcat 6423791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 7550889 - 7550930
Alignment:
Q  348 tgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  7550889 tgtcatcgtgagcttaactcagttgat-atgaacaatgcataa 7550930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 39452449 - 39452494
Alignment:
Q  344 aatttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||    
T  39452449 aatttgtcctcgtgagcttagctcagttggt-atgaacaatgcataa 39452494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 14983523 - 14983475
Alignment:
Q  341 taaaatttgtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    ||||| |||||||| ||||||||||||||||||||| ||| |||||||||    
T  14983523 taaaacttgtcatcttgagcttaactcagttggtaaggaa-aatgcataa 14983475  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 27853353 - 27853389
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  27853353 tcgtgagcttaactcagttggt-atgaacaatgcataa 27853389  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 50849136 - 50849100
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||||||| |||||||||||    
T  50849136 tcgtgagcttaactcagttggtaatg-acaatgcataa 50849100  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 122885 - 122925
Alignment:
Q  349 gtcatcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  122885 gtcatcgtgagcttaactcaattggt-atgaacaatgcataa 122925  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 28951397 - 28951433
Alignment:
Q  353 tcgtgagcttaactcagttggtaatgaacaatgcataa 390  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28951397 tcgtgagcttaactcagttggt-atgaacaatgcataa 28951433  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 375
Target Start/End: Original strand, 7885533 - 7885561
Alignment:
Q  347 ttgtcatcgtgagcttaactcagttggta 375  Q
    |||||||||||||||||||||||||||||    
T  7885533 ttgtcatcgtgagcttaactcagttggta 7885561  T

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