View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2158_low_16 (Length: 554)
Name: NF2158_low_16
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 5 - 539
Target Start/End: Complemental strand, 26352764 - 26352230
Alignment:
| Q |
5 |
ttcactttcttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26352764 |
ttcactttcttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgc |
26352665 |
T |
|
| Q |
105 |
taacctgtttcgtttttgtttccctttttcgtgaaaacgatttctctggtatcattaattctcattccaatttcaaacttctgttaaatcatgttttaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26352664 |
taacctgtttcgtttttgtttccctttttcgtgaaaacgatttctctggtatcattaattcttattccaatttcaaacttctgttaaatcatgttttaat |
26352565 |
T |
|
| Q |
205 |
ttgaggttcaagtctagtttacatgagacgaaaaagctttattgttcatgtaggttaagccttattgatgctatgctactgctcaaatcattgctccttt |
304 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26352564 |
ttgaggtttaagtctagtttacatcagacgaaaaagctttattgttcatgtaggttaagccttattgatgctatgctactgctcaaatcattgctccttt |
26352465 |
T |
|
| Q |
305 |
aagtgtttcttgccaagggtactagatctgtttgaagtgaattaatcttagcttgttgaatctttatagatatgttttagttcttactcttgtggctgtg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26352464 |
aagtgtttcttgccaagggtactagatctgtttgaagtgaattaatcttagcttgttgaatctttatagatctgttttagttcttactcttgtggctgtg |
26352365 |
T |
|
| Q |
405 |
tataattgtttatcaattcctgttccttgctcatctttgtttacttagttaaatctcttcttcaatactacttaactagttggttgattccaaatttgag |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26352364 |
tataattgtttatcaattcctgttccttgctcatctttgtttacttagttaaatctcttcttcaatactacttaactagttgattgattccaaatttgag |
26352265 |
T |
|
| Q |
505 |
tcttaactgatattgaaaatcccgagtgtaacaaa |
539 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
26352264 |
tcttaactgatattgaaaatcctgagtgtaacaaa |
26352230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 20014094 - 20014006
Alignment:
| Q |
6 |
tcactttcttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtg |
94 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||| |||||| |||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
20014094 |
tcactttcttttcactgctaatggatgtagtatcgcatttgcagtgttgtgaatgaaagatgatagataattctgcagtatcactggtg |
20014006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 26649288 - 26649426
Alignment:
| Q |
41 |
catttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgctaacctgtttcgtttttgtttccctttttcgtgaaa |
140 |
Q |
| |
|
||||||| ||||| |||||||| ||| | |||||||| | || ||||||||||||||| | |||| ||||| ||||||||||||| ||||| ||||| |
|
|
| T |
26649288 |
catttgctttgttgagaatgaaaggtgatatatgattcttccgtatcactggtgtggcaggttctaatgtgtttagtttttgtttccc-ttttcatgaaa |
26649386 |
T |
|
| Q |
141 |
acgatttctctggtatcattaattctcattccaatttcaaactt |
184 |
Q |
| |
|
|| |||| || | ||| ||||||||||||||||||||||| |
|
|
| T |
26649387 |
actattttgctagcatc----attctcattccaatttcaaactt |
26649426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 19983899 - 19983944
Alignment:
| Q |
285 |
gctcaaatcattgctcctttaagtgtttcttgccaagggtactaga |
330 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
19983899 |
gctcaaagcattgctcctttgagtgtttcttgccatgggtattaga |
19983944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 1723224 - 1723258
Alignment:
| Q |
296 |
tgctcctttaagtgtttcttgccaagggtactaga |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
1723224 |
tgctcctttaagtgttgcttgccaagggtactaga |
1723258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University