View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_17 (Length: 552)
Name: NF2158_low_17
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 204 - 537
Target Start/End: Original strand, 41487504 - 41487834
Alignment:
| Q |
204 |
gctaaaactgctattaagcctaaaggaaaggatcaccgaatcatctcccaaacttttcctggttgcactttcaatttccagaggaatattctccgtgttc |
303 |
Q |
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| T |
41487504 |
gctaaaactgctattaaacctaaaggaaaggatcaccgaatcatctcccaaacttttcccagttgcactttcaatttccggaggaatattctccgtgttc |
41487603 |
T |
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| Q |
304 |
gggtgaagcgttgttataattaaacattgttctaattaaacaatccatgtcttnnnnnnnnnnnntgtatatggaataaaacaagggtagtgttaaccac |
403 |
Q |
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| T |
41487604 |
gggtgaagcgttgttataattaaacattgttctaattaaacaatctatgtcttaaaaaaaaa---tgtatatggaataaaacaaggatagtgttaaccac |
41487700 |
T |
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| Q |
404 |
gtcaaaaatcaaatgcagtaaaacaattattctcttgtttcaattccttataaagttcaaacaattagcgatataaaagccnnnnnnnggttccaactta |
503 |
Q |
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| T |
41487701 |
gtcagaaatcaaatgcagtaaaacaattattctcttgtttcaattccttataaagttcaaacaattagcgatataaaagccaaaaaaaggttccaactta |
41487800 |
T |
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| Q |
504 |
ctgagcaaatgaaacaaaacaacacaattaaact |
537 |
Q |
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| T |
41487801 |
ctgagcaaatgaaacaaaacaacacaattaaact |
41487834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 37320533 - 37320725
Alignment:
| Q |
11 |
cacagaaccacaaccaaagctgtaaaagtatccagctgaaccacaaacacaaaacaaattgttcaatacatacatatatgtaataatatgtttatgttta |
110 |
Q |
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| T |
37320533 |
cacagaaccacaaccaaagctgtaaaagtatccagctgaaccacaaacacaaaacaaattgttcaatacatacatatatgtaataatatgtttatgttta |
37320632 |
T |
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| Q |
111 |
tataggaaccaaaataaatagagtaatgaaatttccaaaactagttaatatgaaagagaagagaagaccaagaaaaataactcaggcgcctat |
203 |
Q |
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| T |
37320633 |
tataggaaccaaaataaatagagtaatgaaatttccaaaactagttaatatgaaagtgaagagaagaccaagaaaaataactcaggcgcctat |
37320725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 20434100 - 20434060
Alignment:
| Q |
424 |
aaacaattattctcttgtttcaattccttataaagttcaaa |
464 |
Q |
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| T |
20434100 |
aaacaattattctcctgtttcaattccttataatgttcaaa |
20434060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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