View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_18 (Length: 552)

Name: NF2158_low_18
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_18
NF2158_low_18
[»] chr4 (9 HSPs)
chr4 (322-523)||(4027034-4027261)
chr4 (18-210)||(4012229-4012423)
chr4 (98-210)||(4003647-4003759)
chr4 (118-204)||(3952470-3952556)
chr4 (124-210)||(3989842-3989928)
chr4 (449-522)||(4012888-4012961)
chr4 (449-522)||(3951616-3951690)
chr4 (335-374)||(4012792-4012831)
chr4 (481-523)||(4004506-4004548)
[»] chr5 (2 HSPs)
chr5 (70-210)||(13399654-13399794)
chr5 (322-374)||(13399911-13399963)
[»] chr2 (1 HSPs)
chr2 (89-131)||(131820-131862)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 322 - 523
Target Start/End: Original strand, 4027034 - 4027261
Alignment:
Q  322 tatgtttttatagataaagttgcaatacgaattcatatatcagtttcttggtc-----ttaaattccaattaaccaaattcagctagaaataaaa---at 413  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||||   ||    
T  4027034 tatgtttttatagataaagttgcaatacaaattcatatatcagtttcttggtccaaaattaaactccaattaaccaaattcagctagaaataaaaaatat 4027133  T
Q  414 atatatagtgatccagagga--ggatt----------------gtattatgaataatgttataagagtctttactgagataataaactataaatggatga 495  Q
    ||||||||| ||||||||||  | |||                | ||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  4027134 atatatagtaatccagaggattgtattgacttttgcaagtgaaggattgtgactaatgttataatagtctttactgagctaataaactatagatggatga 4027233  T
Q  496 gtagcagaacatatttcacatacatgat 523  Q
    ||||||||||||| ||||||||||||||    
T  4027234 gtagcagaacatacttcacatacatgat 4027261  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 4012229 - 4012423
Alignment:
Q  18 ttttggtgacattttatgagtaacgtataattcttgtgtcattaat--gagtccgaagatatagtatgagctctagatcaaagtcaaattttataagtga 115  Q
    ||||| ||||||||||||| |||| || || | | || ||||||||  ||| | || ||||||  ||||||| ||||||| |||||||||||||||| ||    
T  4012229 ttttgatgacattttatgattaacatagaactatggtatcattaatatgagccagacgatataacatgagctttagatcagagtcaaattttataagaga 4012328  T
Q  116 agcaacaatcacctttgcaacaattttgttgaccatttctttcttcttaactcctggaatagcccacaagtttaactggtgctttgaaattctct 210  Q
    | |||||||||||| || ||||||||| |||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||| |||||    
T  4012329 aacaacaatcacctctgaaacaattttattgaccatttctttcttcttaactccttcaattgcccacaattttaactggtgctttgaaactctct 4012423  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 4003647 - 4003759
Alignment:
Q  98 gtcaaattttataagtgaagcaacaatcacctttgcaacaattttgttgaccatttctttcttcttaactcctggaatagcccacaagtttaactggtgc 197  Q
    ||||||||||||||||||||||| || |||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  4003647 gtcaaattttataagtgaagcaaaaaccaccttcgcgacaactttattgaccatttctttcttcttaactcctggaatagcccacaagtttaattgatgc 4003746  T
Q  198 tttgaaattctct 210  Q
    ||| |||||||||    
T  4003747 tttaaaattctct 4003759  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 3952556 - 3952470
Alignment:
Q  118 caacaatcacctttgcaacaattttgttgaccatttctttcttcttaactcctggaatagcccacaagtttaactggtgctttgaaa 204  Q
    |||||||||||||||| ||  |||| ||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||    
T  3952556 caacaatcacctttgcgaccgttttattgaccatttctttcatcttaactcctgcattagaccacaagtttaactggtgctttgaaa 3952470  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 3989842 - 3989928
Alignment:
Q  124 tcacctttgcaacaattttgttgaccatttctttcttcttaactcctggaatagcccacaagtttaactggtgctttgaaattctct 210  Q
    |||||||||  ||||| || |||||  ||||||||||||||||||||| ||||| |||   | ||||||||||||||||||||||||    
T  3989842 tcacctttgtgacaatattattgacgctttctttcttcttaactcctgcaatagtccatgtgcttaactggtgctttgaaattctct 3989928  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 522
Target Start/End: Original strand, 4012888 - 4012961
Alignment:
Q  449 taatgttataagagtctttactgagataataaactataaatggatgagtagcagaacatatttcacatacatga 522  Q
    ||||||||||| |||||| |  ||| | ||| |||||||||||||||||||| | |||||||||||||||||||    
T  4012888 taatgttataatagtcttcagagagtttatatactataaatggatgagtagccgcacatatttcacatacatga 4012961  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 3951690 - 3951616
Alignment:
Q  449 taatgttataa-gagtctttactgagataataaactataaatggatgagtagcagaacatatttcacatacatga 522  Q
    ||||||||||| |||||| || ||||||| || ||||||||||| ||||||||||||  ||| ||||||||||||    
T  3951690 taatgttataaagagtctataatgagatattatactataaatgggtgagtagcagaatgtatctcacatacatga 3951616  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 4012792 - 4012831
Alignment:
Q  335 ataaagttgcaatacgaattcatatatcagtttcttggtc 374  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  4012792 ataaagttgcaatacaaattcacatatcagtttcttggtc 4012831  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Original strand, 4004506 - 4004548
Alignment:
Q  481 actataaatggatgagtagcagaacatatttcacatacatgat 523  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||    
T  4004506 actatatatggatgagtaccagcacatatttcacatacatgat 4004548  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 13399654 - 13399794
Alignment:
Q  70 gaagatatagtatgagctctagatcaaagtcaaattttataagtgaagcaacaatcacctttgcaacaattttgttgaccatttctttcttcttaactcc 169  Q
    ||||||||| ||||| || |||||||  || ||||| ||| ||||||| ||||||||||||||  || ||||| | ||||||||||||||||||||||||    
T  13399654 gaagatataatatgaactttagatcagtgttaaattgtatgagtgaagaaacaatcacctttgtgacgattttatggaccatttctttcttcttaactcc 13399753  T
Q  170 tggaatagcccacaagtttaactggtgctttgaaattctct 210  Q
     | |||||||  ||||||||||  |||||||||||||||||    
T  13399754 ggcaatagccagcaagtttaacctgtgctttgaaattctct 13399794  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 13399911 - 13399963
Alignment:
Q  322 tatgtttttatagataaagttgcaatacgaattcatatatcagtttcttggtc 374  Q
    |||| |||||||||||||||| |||||| |||||| |||||||||||||||||    
T  13399911 tatgcttttatagataaagtttcaatacaaattcaaatatcagtttcttggtc 13399963  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 131862 - 131820
Alignment:
Q  89 tagatcaaagtcaaattttataagtgaagcaacaatcaccttt 131  Q
    ||||||||||||||||| |||||||||||||||  ||||||||    
T  131862 tagatcaaagtcaaattatataagtgaagcaaccgtcaccttt 131820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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