View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_19 (Length: 540)
Name: NF2158_low_19
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 52049930 - 52050189
Alignment:
| Q |
1 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttggtgtacgtaccctctatcagattcgtg |
100 |
Q |
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| T |
52049930 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttgttgtacgtaccctctatcagattcgtg |
52050029 |
T |
|
| Q |
101 |
gttaataatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050030 |
gttattaatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
52050129 |
T |
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| Q |
201 |
accacctaaacagaacnnnnnnnntatacaacatattttattctaagttcattgccttag |
260 |
Q |
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| T |
52050130 |
accacctaaacagaacaaaaaaaatatacaacatattttattctaagttcattgccttag |
52050189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 322 - 540
Target Start/End: Original strand, 52050246 - 52050464
Alignment:
| Q |
322 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagattacatactataaattagtcacatgaaatgttcccattcagctaatatttat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050246 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagattacatactataaattagtcacatgaaatgttcccattcagctaatatttat |
52050345 |
T |
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| Q |
422 |
tttcataatatagattaaatcctagtgcagctattcttttaatgcggataaaatgaaacacaagaactgtgtaaaagtcattgaaaacctcgtatcagag |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52050346 |
tttcataatatagattaaatcctagtgcagctattcttttaatgcggataaaatgaaacgcaagaactgtgtaaaagtcattgaaaacctcgtatcagag |
52050445 |
T |
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| Q |
522 |
agaattttggtaacaaaaa |
540 |
Q |
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||||||||||||||||||| |
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| T |
52050446 |
agaattttggtaacaaaaa |
52050464 |
T |
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