View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_20 (Length: 537)
Name: NF2158_low_20
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Complemental strand, 47075869 - 47075356
Alignment:
| Q |
14 |
tactaaagtaggttctcttattctcatccacacctacccataaccaatgtagcaagaaaaatcttttgatcactttctcttatttcaaaatttgaatcac |
113 |
Q |
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| T |
47075869 |
tactaaagtaggttctcttattctcatccacacctacccataaccaatgtagcaataaaaatcttttgatcactttctcttatttcaaaatttgaatcac |
47075770 |
T |
|
| Q |
114 |
tacttttctcccttgtgaacataatgaccgatgcatatttcacagcgcac-------acaccacnnnnnnnaactagaaaccacataatgattgaatcat |
206 |
Q |
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| T |
47075769 |
tacttttctcccttgtgaacataatgaccgatgcatatttcacagcgcactgcgcacacaccactttttttaactagaaaccacataatgattgaatcat |
47075670 |
T |
|
| Q |
207 |
tacatccttaaaattcaaagtgcacatttctattatttctctcctctatagtctatagtacagtagttttgatcccttgtgttgaagattttggtaacag |
306 |
Q |
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| T |
47075669 |
tacatccttaaaattcaaagtgcacatttctattatttctctcctctatagtctgtagtacagtagttttgatcccttgtgttgaagattttggtaacag |
47075570 |
T |
|
| Q |
307 |
tgattttgctaaaataatagaagtgaccgtgtaattttgaccaaaataagaatggtagggccaagatgtctacttttatgaagtgagacagagattatga |
406 |
Q |
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| T |
47075569 |
tgattttgctaaaataatagaagtgaccgtgtaattttgaccaaaataagaatggtagggccaagatgtctacttttatgaagtgagacagagattatga |
47075470 |
T |
|
| Q |
407 |
ggtttcccattaccatcttgagagaatgataatggaataaataaggaagtatgaaaggattcattctgcgacacagggatactacaaggctcataaatga |
506 |
Q |
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| T |
47075469 |
ggtttcccattaccatcttgagagaatgataatggaataaataaggaagtatgaaagaattcattctgcgacacagggatactacaaggctcataaatga |
47075370 |
T |
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| Q |
507 |
tgtactcccgagtc |
520 |
Q |
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||||||||| |||| |
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| T |
47075369 |
tgtactccccagtc |
47075356 |
T |
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