View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_25 (Length: 512)
Name: NF2158_low_25
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 25661394 - 25661559
Alignment:
| Q |
37 |
tcaatggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtga |
136 |
Q |
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| T |
25661394 |
tcaatggagggaccaaggtttctgacaaagaatttgttgtgactacagagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtga |
25661493 |
T |
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| Q |
137 |
agctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
202 |
Q |
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| T |
25661494 |
agctaagttgcagagaaaagctgaggtaacgtttatggtgttgagagttactgacttgaaagctta |
25661559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 23993667 - 23993552
Alignment:
| Q |
87 |
ttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagtta |
186 |
Q |
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| T |
23993667 |
ttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagctaagttgcagagaaaagctgaggtaatgtttatggtgttgagagtta |
23993568 |
T |
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| Q |
187 |
ctgacttgaaagctta |
202 |
Q |
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| T |
23993567 |
ctgacttgaaagctta |
23993552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 5620413 - 5620502
Alignment:
| Q |
84 |
gagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatg |
173 |
Q |
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| T |
5620413 |
gagttgcttatgagtcaattgctgaaactagatggaattgaggccgaaggtgaagcaaagttgcagagaaaagctgaggtagtttttatg |
5620502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 23993711 - 23993671
Alignment:
| Q |
30 |
gtggctatcaatggagggaccaaggtttctgacaaagaatt |
70 |
Q |
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| T |
23993711 |
gtggctgtcaatggagggaccaaggtttctaacaaagaatt |
23993671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 7769680 - 7769565
Alignment:
| Q |
87 |
ttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagtta |
186 |
Q |
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| T |
7769680 |
ttgcttatgaggaaattactggagctggatggtattaaggctgaaggtgaagctaagttgcagagaaaagttgaggtaatgtttatggtgttgagagtta |
7769581 |
T |
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| Q |
187 |
ctgacttgaaagctta |
202 |
Q |
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| T |
7769580 |
ctgacttgaaggctta |
7769565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 12405906 - 12405985
Alignment:
| Q |
30 |
gtggctatcaatggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgctgga |
109 |
Q |
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| T |
12405906 |
gtggctgtcaatggagggaccacggtttctgacaaagaatttattgtgactacagagttgcttatgaggaaattgctgga |
12405985 |
T |
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