View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_26 (Length: 506)
Name: NF2158_low_26
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 40871444 - 40871945
Alignment:
| Q |
1 |
ttagttcaattggttgaaccggtcggtccattcaaactcggtgttgtttttaaaacatttaccaagatcctcataaacaatctattctaaatataaatat |
100 |
Q |
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| T |
40871444 |
ttagttcaattggttgaaccgatcgatcctttcaaactcggtgttgtttttaaaacatttaccaagatcctcagaaacaatctattctaaatataaatat |
40871543 |
T |
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| Q |
101 |
gactttattttgtgttaattaatattctatgtttaataaggatcaacaagtcaacaatcatttagctctatggctatcaatcaatcactgtttggttaaa |
200 |
Q |
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| T |
40871544 |
gactttattttgtgttaattaatattctatgtttaataaggatcaacaagtcaacaatcatttagctctatggctatcaatcaatcactgtttggttaaa |
40871643 |
T |
|
| Q |
201 |
tattttattccaagagtgtttaattttccatactctactaataggtatagagaaatgaggtgctagaaaatattcctatcaaatagatcatttttattta |
300 |
Q |
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| T |
40871644 |
tattttattccaagagtgtttaattttccatactctactaataggtatagagaaatgagctgctagaaaatattcctatcaaatagatcatttttattta |
40871743 |
T |
|
| Q |
301 |
aaagtcccatgtggtcccttttctaagatatatactcattaacattataatgtcacgtttattaaacaaaacaaagcatatagctannnnnnngtatgtt |
400 |
Q |
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| T |
40871744 |
aaagtcccatgtggtcccttttctaagatatatactcattaacattataatgtcacgtttattaaacaaaacaaagcatatagctatttttttgtatgtt |
40871843 |
T |
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| Q |
401 |
gctttatggcacaattaattaatatatgnnnnnnnnntatatgcagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaac |
500 |
Q |
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| T |
40871844 |
gctttatggcacaattaattaatatatgaaaaaa----atatgtagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaac |
40871939 |
T |
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| Q |
501 |
attccc |
506 |
Q |
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| T |
40871940 |
attccc |
40871945 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 497
Target Start/End: Complemental strand, 21083919 - 21083863
Alignment:
| Q |
441 |
atgcagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgc |
497 |
Q |
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| T |
21083919 |
atgcagatttttagtagatgatgtgcccataagaaggtatcctaggaaaagtgatgc |
21083863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 41270213 - 41270272
Alignment:
| Q |
444 |
cagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacatt |
503 |
Q |
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| T |
41270213 |
cagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagtgacacaacatt |
41270272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 503
Target Start/End: Complemental strand, 27684289 - 27684240
Alignment:
| Q |
454 |
gtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacatt |
503 |
Q |
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| T |
27684289 |
gtggatgatatgcccataaggaggtacccaaggaagagtgatgcaacatt |
27684240 |
T |
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