View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_27 (Length: 503)

Name: NF2158_low_27
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_27
NF2158_low_27
[»] chr7 (10 HSPs)
chr7 (13-486)||(11242880-11243353)
chr7 (71-312)||(11267804-11268038)
chr7 (13-77)||(11267542-11267606)
chr7 (382-486)||(11268299-11268403)
chr7 (382-486)||(11281795-11281899)
chr7 (404-484)||(9046585-9046665)
chr7 (315-367)||(11281898-11281950)
chr7 (315-367)||(11268248-11268300)
chr7 (247-293)||(1864993-1865039)
chr7 (231-295)||(4873738-4873801)
[»] chr1 (6 HSPs)
chr1 (238-486)||(12726547-12726785)
chr1 (206-484)||(27319027-27319306)
chr1 (179-462)||(898432-898713)
chr1 (370-486)||(17734646-17734762)
chr1 (234-290)||(3362972-3363027)
chr1 (220-296)||(26290097-26290173)
[»] chr3 (2 HSPs)
chr3 (13-173)||(435398-435558)
chr3 (182-397)||(16998454-16998670)
[»] chr8 (2 HSPs)
chr8 (182-421)||(9797777-9798011)
chr8 (319-402)||(33167886-33167971)
[»] chr4 (5 HSPs)
chr4 (200-486)||(17465337-17465623)
chr4 (429-486)||(21277119-21277176)
chr4 (341-483)||(8898903-8899044)
chr4 (247-293)||(11376905-11376951)
chr4 (352-396)||(12272809-12272853)
[»] chr2 (3 HSPs)
chr2 (322-486)||(21515842-21516006)
chr2 (220-290)||(21511328-21511397)
chr2 (258-296)||(35407066-35407104)
[»] chr5 (3 HSPs)
chr5 (258-423)||(42687054-42687222)
chr5 (239-287)||(19222611-19222659)
chr5 (443-487)||(26266833-26266877)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 11243353 - 11242880
Alignment:
Q  13 aatatttgttggtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatgtaacggcggatattggcatgatttgtttgaagcct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  11243353 aatatttgttggtaatatcatttaataagttttgtctacttgtagtctcgtacaatatcatcatgtaatggcggatattgacatgatttgtttgaagcct 11243254  T
Q  113 agtattttgtataacgttggtccccaacgagttagaaatatattatttttctatgtggcaattggcaaatgatacaaatttgtaagtatacgattctatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  11243253 agtattttgtataacgttggtccccaacgagttagaaatatattattttcctatgtggcaactggcaaatgatacaaattcgcaagtatacgattctatc 11243154  T
Q  213 tagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11243153 tagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatt 11243054  T
Q  313 tgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagtta 412  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11243053 tttttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagtta 11242954  T
Q  413 aattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaataa 486  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11242953 aattcttttcttaagacaagattctcataggtatttcatttttcctttcagaatacataaaagtatctcaataa 11242880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 11267804 - 11268038
Alignment:
Q  71 catcatgtaacggcggatattggcatgatttgtttgaagcctagtattttgtataacgttggtccccaacgagttagaaatatattatttttctatgtgg 170  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||| ||||||    
T  11267804 catcatgtaacggcttatattggcatgatttgtttgaagcctagtattttgtataatgttggcctccaacgggttagaaatatattatttttcaatgtgg 11267903  T
Q  171 caattggcaaatgatacaaatttgtaagtatacgattctatctagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaa 270  Q
    |       |||||||||||||  | ||||||| | |||||||  ||||||||||||||| || ||| ||||||||||||||||| |||| |||||||| |    
T  11267904 c-------aaatgatacaaatacgcaagtatagggttctatcgtgtagtaaagattatcgtccacaaagagttatatgtaattatcgattttgtttttta 11267996  T
Q  271 ttatgattagctgaaaagatcaagttggttggtttcataatt 312  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  11267997 ttatgcttagctgaaaagatcaagttggttggttttataatt 11268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 11267542 - 11267606
Alignment:
Q  13 aatatttgttggtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatg 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11267542 aatatttgttggtaatatcatttaataagttttgtctacttgtagtcttctacaatatcatcatg 11267606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 486
Target Start/End: Original strand, 11268299 - 11268403
Alignment:
Q  382 atttcaaatctatttctatatctttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctc 481  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||   |||||||||||| ||||||||| || |||||||| ||||||     
T  11268299 atttcaaatttatttctctatctttaaattaaattcttttcttaagacaagattcaattaggtatttcatgtttcctttcggagtacataaatgtatctt 11268398  T
Q  482 aataa 486  Q
    |||||    
T  11268399 aataa 11268403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 382 - 486
Target Start/End: Complemental strand, 11281899 - 11281795
Alignment:
Q  382 atttcaaatctatttctatatctttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctc 481  Q
    ||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||||  |||||||||||| ||||||||| || |||||||| ||||||     
T  11281899 atttcaaatttatttttctatctttaaattaaattcttttcttaagacaaaattcttttaggtatttcatgtttcctttcggagtacataaatgtatctt 11281800  T
Q  482 aataa 486  Q
    |||||    
T  11281799 aataa 11281795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 9046665 - 9046585
Alignment:
Q  404 tttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaat 484  Q
    |||| ||||||||| ||||| ||||||| |||||| |  | ||||||| |||||||||||||||||| || ||||||||||    
T  9046665 tttatgttaaattcgtttctaaagacaatattctcttttgcatttcatgtttcctttcagaatacatgaatgtatctcaat 9046585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 11281950 - 11281898
Alignment:
Q  315 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaat 367  Q
    |||||||||||||| || ||||||  |||||||||||||||||||||||||||    
T  11281950 tttgttaaaattcaaatcaaaaggtgtcatgggattgttggtttcatcttaat 11281898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 11268248 - 11268300
Alignment:
Q  315 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaat 367  Q
    |||||||||||||| || ||||||  | |||||||||||||||||||||||||    
T  11268248 tttgttaaaattcaaatcaaaaggtgttatgggattgttggtttcatcttaat 11268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 1865039 - 1864993
Alignment:
Q  247 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 293  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  1865039 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 1864993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 4873801 - 4873738
Alignment:
Q  231 tctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagt 295  Q
    ||||||||||||||| ||||||||  ||| | ||||| ||| |||||||||||||||||| ||||    
T  4873801 tctacagagagttat-tgtaattacagatttcgttttcaatgatgattagctgaaaagattaagt 4873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 238 - 486
Target Start/End: Original strand, 12726547 - 12726785
Alignment:
Q  238 agagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag 337  Q
    ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||   |||||||||||||||||||||||    
T  12726547 agagttatatgtaattatcaatcttatttttaattgtgattggctgaaaagatcaaattggttggttttataatcgttttgttaaaattcagattaaaag 12726646  T
Q  338 gcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttcttaagacaagattct 437  Q
    || |||||||||    |||||||||||||| || ||||||      | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12726647 gcgtcatgggat----ggtttcatcttaatatcgaatcat------tccaaatctatttctctatctttaagttaaattcttttcttaagacaagattct 12726736  T
Q  438 cgtaggtatttcatttttcctttcagaatacataaaagtatctcaataa 486  Q
    | ||| ||||| || ||||||||||||||| ||||| ||||||||||||    
T  12726737 cttagttattttatgtttcctttcagaatatataaatgtatctcaataa 12726785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 206 - 484
Target Start/End: Complemental strand, 27319306 - 27319027
Alignment:
Q  206 ttctatctagtagtaaa-gattatc-atctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggt 303  Q
    ||||||| ||||||||| ||||||| ||| | ||||||||| |  |||||| |||| ||| ||||| || |||||||||||||| || ||||||||||||    
T  27319306 ttctatcgagtagtaaaagattatcgatccatagagagttaaac-taattatcgattttgattttagttttgattagctgaaaatattaagttggttggt 27319208  T
Q  304 ttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatc 403  Q
    || ||||||  |||||| |||| || |||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||    
T  27319207 tttataattgctttgttcaaatccaaattaaaaggcttcatggaatcattggtttcatcttaatgtctaatcataaacattccaaatttatttctctatc 27319108  T
Q  404 tttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaat 484  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||| |||||| ||| |||| |||||    
T  27319107 tttaagttaaattcttttctaaagaaaagattctcttaggtatttcatgtttcctttcaaaatacagaaatgtatttcaat 27319027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 462
Target Start/End: Complemental strand, 898713 - 898432
Alignment:
Q  179 aaatgatacaaatttgtaagtatacgattctatctagtagtaaagat--tatcatctacagagagttatatgtaattaacgatcttgtttttaattatga 276  Q
    ||||||||| ||| |||| || |||| ||||||| | ||||||| ||  |||| || | ||||||||| ||  ||||| ||||||||||||||||| |||    
T  898713 aaatgatacgaatctgtatgtgtacggttctatcgattagtaaaaatattatcttccatagagagttaaat--aattaccgatcttgtttttaattgtga 898616  T
Q  277 ttagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatca 376  Q
    |||| ||| ||||| || || |||||||| ||||   ||| ||||||||||| |||||||||   |||||||| |||| | ||||||||||||||| |||    
T  898615 ttagttgacaagataaaatttgttggttttataaccggtt-gttaaaattcaaattaaaaggtgccatgggatcgttgttctcatcttaatgtcaattca 898517  T
Q  377 taaacatttcaaatctatttctatatctttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttca 462  Q
    |||||||| ||| ||||||||| ||| |||||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||    
T  898516 taaacattccaagtctatttctctat-tttaagttaaattcttttctaaagacaagagtctcttaggtatttcatgttttctttca 898432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 486
Target Start/End: Original strand, 17734646 - 17734762
Alignment:
Q  370 caaatcataaacatttcaaatctatttctatatctttaagttaaattc-ttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatac 468  Q
    ||||||||||||||| | ||||||||||  | | | || ||||||||| |||||||||||||||||| || || ||||||||| ||||||||||||||||    
T  17734646 caaatcataaacattcccaatctatttccttgt-tctatgttaaattcattttcttaagacaagattttcataagtatttcatgtttcctttcagaatac 17734744  T
Q  469 ataaaagtatctcaataa 486  Q
    || || |||||| |||||    
T  17734745 atgaatgtatcttaataa 17734762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 3362972 - 3363027
Alignment:
Q  234 acagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 290  Q
    |||||||||||| |||||||| |||| | ||||| |||| |||||||||||||||||    
T  3362972 acagagagttat-tgtaattaccgatttcgttttcaattgtgattagctgaaaagat 3363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 26290097 - 26290173
Alignment:
Q  220 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagtt 296  Q
    |||||||||| || ||| | |||||||||||| ||  ||| |||||||||||  | ||||||||||||| |||||||    
T  26290097 aaagattatcgtccacataaagttatatgtaagtattgattttgtttttaatggtaattagctgaaaagttcaagtt 26290173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 435398 - 435558
Alignment:
Q  13 aatatttgttggtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatgtaacggcggatattggcatgatttgtttgaagcct 112  Q
    |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||  || || ||||| ||||||||||||||    
T  435398 aatatttgttcgtaatatcatataataagctttgtttacttgtagtcttgtacaatatcatcatgtaacggctcatttttgcatggtttgtttgaagcct 435497  T
Q  113 agtattttgtataacgttggtccccaacgagttagaaatatattatttttctatgtggcaa 173  Q
    |||||||||||||| |||||||||||| |||| | ||||||||||||||  ||||||||||    
T  435498 agtattttgtataatgttggtccccaatgagtcataaatatattattttcttatgtggcaa 435558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 182 - 397
Target Start/End: Original strand, 16998454 - 16998670
Alignment:
Q  182 tgatacaaatttgtaagtatacgattctatctagtagtaaa-gattatcat-ctacagagagttatatgtaattaacgatcttgtttttaattatgatta 279  Q
    ||||||||||| | |||||||| ||||||||  |||||||| ||||||  | | |||  ||||||||||||| || | |||||||||| | || ||||||    
T  16998454 tgatacaaattcgcaagtatacaattctatcgcgtagtaaaagattattgttccacaatgagttatatgtaactaccaatcttgtttt-agttttgatta 16998552  T
Q  280 gctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataa 379  Q
    |||||||| || |||||||||||||| |||| |  || ||||||||||| ||||||| |  ||||| |||  ||||||| ||| ||||||||||||||||    
T  16998553 gctgaaaaaattaagttggttggttttataaatgcttggttaaaattcatattaaaatgtgtcatgtgatcattggttttatcataatgtcaaatcataa 16998652  T
Q  380 acatttcaaatctatttc 397  Q
    ||||| ||||||||||||    
T  16998653 acattccaaatctatttc 16998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 182 - 421
Target Start/End: Original strand, 9797777 - 9798011
Alignment:
Q  182 tgatacaaatttgtaagtatacgattctatctagtagtaaa-gattatca-tctacagagagttatatgtaattaacgatcttgtttttaattatgatta 279  Q
    |||||| |||| | ||||||||| ||||||| ||||||||| |||||||| || |||  |||||||||||||||| | |||||||||||  || ||||||    
T  9797777 tgatacgaattcgcaagtatacggttctatcgagtagtaaaagattatcaatccacatggagttatatgtaattaccaatcttgtttttcgttttgatta 9797876  T
Q  280 gctgaaaagatcaagttggttggtttcataatttgt-ttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcata 378  Q
    |||||||||||||||||| |||||       ||||| | ||||||||||| ||||||| || |||||||||  ||||||||||| |||||  ||||||||    
T  9797877 gctgaaaagatcaagttgtttggt-------tttgtctggttaaaattcatattaaaaagcgtcatgggatcattggtttcatcataatgcgaaatcata 9797969  T
Q  379 aacatttcaaatctatttctatatctttaagttaaattctttt 421  Q
    |||||| |||||||||||||  ||| ||| |||||||||||||    
T  9797970 aacattccaaatctatttctccatc-ttatgttaaattctttt 9798011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 33167886 - 33167971
Alignment:
Q  319 ttaaaattcagat--taaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatat 402  Q
    |||||||||||||  ||||| || ||||||||| |  | ||| ||| |||||||||||| || |||||||| ||||||||||||||    
T  33167886 ttaaaattcagatattaaaaagcgtcatgggatcgaggtttttatcgtaatgtcaaatcctagacatttcatatctatttctatat 33167971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 486
Target Start/End: Complemental strand, 17465623 - 17465337
Alignment:
Q  200 atacgattctatctagtagtaaa--gattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttg 297  Q
    ||||| ||||||| |||||||||  ||||||| |  ||||||||||| | ||||||| |||||||||||| | | |||||||||||||||||| |||       
T  17465623 atacggttctatcgagtagtaaaaagattatcgttcacagagagttaaa-gtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggat 17465525  T
Q  298 gttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttc 397  Q
       | ||||| |  || || ||| || |||||||||||| |  |||||| || ||||||||||||| ||||| || || |||||||| ||| |||||| |    
T  17465524 taagatttca-atgttcttagtttaatttcagattaaaaagtgtcatggcatcgttggtttcatctaaatgttaattcctaaacattccaagtctattcc 17465426  T
Q  398 tatatctttaagttaaattcttttcttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaataa 486  Q
    | |||||||| ||||||||||||||| ||  ||||| || | ||||||||| || ||||||||||||||||||||| ||||||||||||    
T  17465425 tctatctttaggttaaattcttttctaaaagcaagaatcacttaggtattttatgtttcctttcagaatacataaatgtatctcaataa 17465337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 21277176 - 21277119
Alignment:
Q  429 caagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaataa 486  Q
    ||||| |||| ||||||||| || ||||||||||||||||||||| ||||||||||||    
T  21277176 caagaatctcttaggtattttatgtttcctttcagaatacataaatgtatctcaataa 21277119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 8899044 - 8898903
Alignment:
Q  341 tcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttcttaagacaagattctcgt 440  Q
    ||||||||||| |||||||||| |||||||||||| | |||||| |  |||||||||| ||| ||||   | ||||| ||||| | ||||| ||  || |    
T  8899044 tcatgggattgatggtttcatcataatgtcaaatctttaacattccctatctatttctctat-tttataatgaattcatttctaaggacaatatattctt 8898946  T
Q  441 aggtatttcatttttcctttcagaatacataaaagtatctcaa 483  Q
     |||||||||| |||||| ||  ||||||| || |||||||||    
T  8898945 tggtatttcatatttcctctcccaatacatgaatgtatctcaa 8898903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 11376905 - 11376951
Alignment:
Q  247 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 293  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  11376905 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 11376951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 12272853 - 12272809
Alignment:
Q  352 ttggtttcatcttaatgtcaaatcataaacatttcaaatctattt 396  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  12272853 ttggttttatcttaatgtcaattcataaacattccaagtctattt 12272809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 486
Target Start/End: Original strand, 21515842 - 21516006
Alignment:
Q  322 aaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattctttt 421  Q
    ||||||| ||||||| || ||||||||| ||||||||||||| | |||||| || |||||||| |||  |||||||| |||||||| |||||||||||||    
T  21515842 aaattcaaattaaaaagcgtcatgggatcgttggtttcatctaattgtcaagtcctaaacattccaagcctatttctctatctttaggttaaattctttt 21515941  T
Q  422 cttaagacaagattctcgtaggtatttcatttttcctttcagaatacataaaagtatctcaataa 486  Q
    || ||   |||| |||| | ||||||| || |||||||| ||||| |||||| ||||||||||||    
T  21515942 ctaaaagaaagaatctcttgggtattttatgtttcctttaagaattcataaatgtatctcaataa 21516006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 21511328 - 21511397
Alignment:
Q  220 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 290  Q
    |||||||||| || ||| ||||||| | ||||||| |||||||||||| ||| ||| ||||||||||||||    
T  21511328 aaagattatcgtccacatagagttaaa-gtaattaccgatcttgttttcaatgatgcttagctgaaaagat 21511397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 35407104 - 35407066
Alignment:
Q  258 atcttgtttttaattatgattagctgaaaagatcaagtt 296  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35407104 atcttgtttttagttgtgattagctgaaaagatcaagtt 35407066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 423
Target Start/End: Original strand, 42687054 - 42687222
Alignment:
Q  258 atcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag--gcatcatgggattgttgg 355  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||  || ||||||  || ||||||| |||||||||||   || | |||||||  || |    
T  42687054 atcttgtttttaattctgattagcggaaaagattaagttggttgagtttataattgcttggttaaaactcagattaaaaaaagcgtaatgggatcatttg 42687153  T
Q  356 tttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctt-taagttaaattcttttct 423  Q
    ||| ||  ||||| | || |||||||||  ||||||||||||| |||||| || |||||||||||||||    
T  42687154 ttttataataatgccgaaacataaacatgccaaatctatttctctatcttatatgttaaattcttttct 42687222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 19222659 - 19222611
Alignment:
Q  239 gagttatatgtaattaacgatcttgtttttaattatgattagctgaaaa 287  Q
    |||||||||||||||| |||| |  |||| |||||||||||||||||||    
T  19222659 gagttatatgtaattaccgatttccttttcaattatgattagctgaaaa 19222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 26266877 - 26266833
Alignment:
Q  443 gtatttcatttttcctttcagaatacataaaagtatctcaataat 487  Q
    |||||| || |||||||| |||||||||||| |||||||||||||    
T  26266877 gtattttatgtttcctttgagaatacataaatgtatctcaataat 26266833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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