View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_30 (Length: 476)

Name: NF2158_low_30
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_30
NF2158_low_30
[»] chr3 (11 HSPs)
chr3 (17-455)||(36024951-36025389)
chr3 (282-456)||(36004455-36004629)
chr3 (275-456)||(36034017-36034198)
chr3 (275-456)||(36017111-36017292)
chr3 (292-444)||(23353659-23353811)
chr3 (292-444)||(23449029-23449181)
chr3 (277-444)||(23500777-23500944)
chr3 (292-439)||(23435230-23435377)
chr3 (411-453)||(35766373-35766415)
chr3 (292-444)||(23406508-23406660)
chr3 (277-441)||(23455778-23455942)
[»] chr4 (1 HSPs)
chr4 (276-447)||(12894812-12894983)
[»] chr2 (3 HSPs)
chr2 (263-363)||(16334938-16335038)
chr2 (263-348)||(16124628-16124713)
chr2 (417-456)||(16124767-16124806)


Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 36024951 - 36025389
Alignment:
Q  17 atgaaggtcaacattcttgttctgcatatattaattacataaaatttatgaccaagattgtagaacaagaaaggaacataaattatttcaaaaagtgata 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024951 atgaaggtcaacattcttgttgtgcatatattaattacataaaatttatgaccaagattgtagaacaagaaaggaacataaattatttcaaaaagtgata 36025050  T
Q  117 aatcaaagacagagagaagataatgaatgttttaaacttctattttattcatatatagaattaaaaaatagaaaacaaaagatgaacatgatttgaagta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025051 aatcaaagacagagagaagataatgaatgttttaaacttctattttattcatatatagaattaaaaaatagaaaacaaaagatgaacatgatttgaagta 36025150  T
Q  217 gttatatatattaaaactttggaaacagagtcatgacatgaataaaagatgtataatttattttatttacttgtgattttgagagtaccacccagctaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36025151 gttatatatattaaaactttggaaacagagtcatgacatgaataaaagatgtataatttattttatttacttgtaattttgagagtaccacccagctaaa 36025250  T
Q  317 ttggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025251 ttggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctt 36025350  T
Q  417 tctgattcctcacatgtgatggatctatttcatagaaaa 455  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36025351 tctgattcctcacatgtgatggatctatttcatagaaaa 36025389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 282 - 456
Target Start/End: Original strand, 36004455 - 36004629
Alignment:
Q  282 tttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttg 381  Q
    ||||| ||| ||||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||| |  ||  | |||||| |||||||||||||| |    
T  36004455 tttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcg 36004554  T
Q  382 ttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaat 456  Q
    | |||||||| |||| |||  |  ||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  36004555 tgcatgttttgcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaat 36004629  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 36034017 - 36034198
Alignment:
Q  275 tattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttca 374  Q
    |||||||||||| |   ||||||| ||| |||||||| |||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||| | |||||||    
T  36034017 tattttatttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttca 36034116  T
Q  375 aatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaat 456  Q
    ||| ||| | ||| ||| |||| |||  | | ||||| ||  | ||||||||||||||||||||||||||||| ||||||||    
T  36034117 aattttgcttatgctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaat 36034198  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 36017111 - 36017292
Alignment:
Q  275 tattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttca 374  Q
    |||||||||||| |   ||||||| ||| |||||||| |||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||| | |||||||    
T  36017111 tattttatttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttca 36017210  T
Q  375 aatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaat 456  Q
    ||| ||| | ||  ||| |||| |||  | | ||||| ||  | ||||||||||||||||||||||||||||| ||||||||    
T  36017211 aattttgcttattctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaat 36017292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 444
Target Start/End: Original strand, 23353659 - 23353811
Alignment:
Q  292 attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt 391  Q
    |||| |||||| ||| ||| ||||||| || || |||||||||||| |||||||||| | ||| ||||| ||  | |||||||||||| | | |||||||    
T  23353659 atttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattgtgcttcaaatctcgcttatgtttt 23353758  T
Q  392 tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctat 444  Q
    ||||| |||  | | ||||| ||  |||| |||||||||||||||||||||||    
T  23353759 tcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 23353811  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 444
Target Start/End: Original strand, 23449029 - 23449181
Alignment:
Q  292 attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt 391  Q
    |||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| ||  | |||||||||||||| | |||||||    
T  23449029 atttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatcttgcttatgtttt 23449128  T
Q  392 tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctat 444  Q
     |||| |||  | | ||||| ||  |||| |||||||||||||||||||||||    
T  23449129 gcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 23449181  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 444
Target Start/End: Original strand, 23500777 - 23500944
Alignment:
Q  277 ttttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaa 376  Q
    ||||| |||| ||| |||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| ||  | |||||||||    
T  23500777 ttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaa 23500876  T
Q  377 tcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctat 444  Q
    ||| | | ||||||| |||| |||  | | ||||| ||  |||| |||||||||||||||||||||||    
T  23500877 tctcgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 23500944  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 439
Target Start/End: Original strand, 23435230 - 23435377
Alignment:
Q  292 attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt 391  Q
    ||||||||||| ||| ||| ||||||| || || || ||||||||  |||||||||| ||||| ||||| ||  | |||||||||||| | | |||||||    
T  23435230 attttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattattgtgcttcaaatctcgcttatgtttt 23435329  T
Q  392 tcaaaagctaacatataacttcctttctgattcctcacatgtgatgga 439  Q
     |||| |||  | | ||||| ||  |||| ||||||||||||||||||    
T  23435330 gcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgga 23435377  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 35766415 - 35766373
Alignment:
Q  411 ttcctttctgattcctcacatgtgatggatctatttcatagaa 453  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||    
T  35766415 ttcctctctgatttctcacatgtgatggatctattttatagaa 35766373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 444
Target Start/End: Original strand, 23406508 - 23406660
Alignment:
Q  292 attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt 391  Q
    ||||||||||| ||| ||| | ||||| || || || ||||||| |||||||||||| | ||| ||||| ||  | ||||| |||||| | | |||||||    
T  23406508 attttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaatctcgcttatgtttt 23406607  T
Q  392 tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctat 444  Q
     |||| |||  | | ||||| ||  |||| |||||||||| ||||||||||||    
T  23406608 gcaaaggcttgcttgtaactcccggtctgcttcctcacatttgatggatctat 23406660  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 441
Target Start/End: Original strand, 23455778 - 23455942
Alignment:
Q  277 ttttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaa 376  Q
    |||||||||| | | ||||||||||| ||| ||| ||||||| || || || |||||||   |||||||||| | ||| ||| | ||  | |||||||||    
T  23455778 ttttatttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaa 23455877  T
Q  377 tcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatc 441  Q
    ||||| | ||||||| |||| |||  | | ||||| ||  | || ||||||||||||||||||||    
T  23455878 tcttgcttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatggatc 23455942  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 447
Target Start/End: Complemental strand, 12894983 - 12894812
Alignment:
Q  276 attttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaa 375  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||| ||  | |||||||  ||||||||    
T  12894983 attttatttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccatttttgtaacatatctttgccgtgcttcaa 12894884  T
Q  376 atcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttc 447  Q
    |||||| || |||||| |||| |||    | || || ||| | |||||||||||||||||||||||||||||    
T  12894883 atcttgctcgtgttttgcaaaggcttgactgtacctccctgtttgattcctcacatgtgatggatctatttc 12894812  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 16335038 - 16334938
Alignment:
Q  263 agatgtataatttattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctt 362  Q
    ||||| |||||| ||||||||||| |   ||||| ||||| |||||||| ||| ||||   ||||||||||||||||||||||||||||||| |||||||    
T  16335038 agatggataattcattttatttaccttgaatttttagagtcccacccagataatttggagacttcggtgagagcatctttccatttttgcaagttgtctt 16334939  T
Q  363 t 363  Q
    |    
T  16334938 t 16334938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 16124628 - 16124713
Alignment:
Q  263 agatgtataatttattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccattt 348  Q
    ||||| |||||| ||||||||||| |   | ||| ||||| |||||||| ||||||||   |||||||||||||||||||||||||    
T  16124628 agatggataattcattttatttaccttgaacttttagagtcccacccagataaattggagacttcggtgagagcatctttccattt 16124713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 456
Target Start/End: Original strand, 16124767 - 16124806
Alignment:
Q  417 tctgattcctcacatgtgatggatctatttcatagaaaat 456  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  16124767 tctgatttctcacatgagatggatctatttcatagaaaat 16124806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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