View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_34 (Length: 464)

Name: NF2158_low_34
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_34
NF2158_low_34
[»] chr3 (3 HSPs)
chr3 (1-410)||(6751734-6752144)
chr3 (1-290)||(6466502-6466792)
chr3 (113-150)||(13501824-13501861)
[»] chr8 (3 HSPs)
chr8 (1-410)||(6956457-6956867)
chr8 (113-150)||(13524666-13524703)
chr8 (113-150)||(13614201-13614238)
[»] chr7 (4 HSPs)
chr7 (1-280)||(22009890-22010170)
chr7 (320-404)||(22010176-22010260)
chr7 (113-150)||(21503517-21503554)
chr7 (113-149)||(5085079-5085115)
[»] chr2 (1 HSPs)
chr2 (1-378)||(21272740-21273118)
[»] scaffold0006 (1 HSPs)
scaffold0006 (113-150)||(204702-204739)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 6751734 - 6752144
Alignment:
Q  1 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  6751734 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacatataacttgtaccatgaaagccacctgattcccttatttctatt 6751833  T
Q  101 tccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagat 199  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6751834 tccaccatttccccaccaaaaagaattcatcattttttcgatttcatcaccaagagatgagggaatcagaaaaatactcataaaataggtaggaatagat 6751933  T
Q  200 tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa 299  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6751934 tggagtgcagatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa 6752033  T
Q  300 acatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccacttt 399  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6752034 acatgtctttcttgctcctccctatcatggaaggaaggccgagatatttatcgatttcaattgcaatgttgacttgtaagatatttgatatgttcacttt 6752133  T
Q  400 ggcttctgcac 410  Q
    |||||||||||    
T  6752134 ggcttctgcac 6752144  T

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Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 6466792 - 6466502
Alignment:
Q  1 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  6466792 ccatattgaacatatataaattcttaaaacccataccacggcttcttttatggacatataacttgtcccatgaaagccacctgattcccttatttctatt 6466693  T
Q  101 tccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatc-ggaaaatactcataaaataggtaggaatagat 199  Q
    ||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||    
T  6466692 tccaccattttcccaccaaaaataattcatgattttctcgatttcatcaccaagagatgagggaatcaaaaaaatacttataaaataggtaggaatagat 6466593  T
Q  200 tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 290  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6466592 tggagtatatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttccttcatacttggtccttaa 6466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 13501861 - 13501824
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatcac 150  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13501861 ccaccaaaaagaattcatcattttctcaatttcatcac 13501824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 6956457 - 6956867
Alignment:
Q  1 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| || |||||||||||| ||||||||| ||||||||||||    
T  6956457 ccatattgaacatatataaattcttaaaacccataccaccatttcttttatggacatataatttatcccatgaaagccacctgattctcttatttctatt 6956556  T
Q  101 tccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagat 199  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||    
T  6956557 ttcaccatttccccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaattagaaaaatactcatgaaataggtaggaatagat 6956656  T
Q  200 tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa 299  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| | | ||||||||||||||||    
T  6956657 tggagtacagatttaatcatcacctcttttcccgccgtagataaagagcgtcatccccatgacttgatcttcctccatattcgatccttaatgaatttaa 6956756  T
Q  300 acatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccacttt 399  Q
    ||| ||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||||    
T  6956757 acaagtctttcttgctcctccctgtcatggaaggaaggtcgagatatttaccggttccaattgcaatgttgacttgtaagatattcgatatgttcacttt 6956856  T
Q  400 ggcttctgcac 410  Q
    |||||||||||    
T  6956857 ggcttctgcac 6956867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 13524666 - 13524703
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatcac 150  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13524666 ccacaaaaaagaattcatcattttctcaatttcatcac 13524703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 13614201 - 13614238
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatcac 150  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13614201 ccacaaaaaagaattcatcattttctcaatttcatcac 13614238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 22009890 - 22010170
Alignment:
Q  1 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatt 100  Q
    |||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  22009890 ccatattgaacaaatataaattcttaaaacccataccaccatttcttttatggacaaataatttgtcccatgaaagccacctgattcccttatttctatt 22009989  T
Q  101 tccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaa-tcggaaaatactcataaaataggtaggaatagat 199  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||| |||||||||||||||    
T  22009990 tccaccatttccctaccataaagaattcatcattttctcgatttcatcaccaagagatgagggaattagaaaaatacttataaagtaggtaggaatagat 22010089  T
Q  200 tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatact 280  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||  || ||||||||||||||||||    
T  22010090 tggagtacagatttaatcatcaccacttttcccgccttagataaagagcgccctcccctagagttgatcttcctccatact 22010170  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 22010176 - 22010260
Alignment:
Q  320 cctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggctt 404  Q
    ||||||| |||||||||||  || ||||||||| ||  |||||||||||||||||||||||||||  ||||||  ||||||||||    
T  22010176 cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaagatattcaatatgtttactttggctt 22010260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 21503554 - 21503517
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatcac 150  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21503554 ccaccaaaaagaattcatcattttctcaatttcatcac 21503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 5085115 - 5085079
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatca 149  Q
    |||||||||||| |||||||| |||||||||||||||    
T  5085115 ccaccaaaaagagttcatcatcttctcgatttcatca 5085079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 21272740 - 21273118
Alignment:
Q  1 ccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatttctatt 100  Q
    |||||||||||||||||||||||||  ||| |||||| ||   ||||||||||||  |||  || ||||| || ||| || |||||||||| || |||||    
T  21272740 ccatattgaacatatataaattcttctaactcatacctccatctcttttatggacggatagtttatcccacgatagccacttgattcccttgttcctatt 21272839  T
Q  101 tccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtaggaatagat 199  Q
    ||||||||||  |||||||||||||||||| |||||||| ||||| || |||| |||||| |||||  ||||| ||||||| || |||||||||||||||    
T  21272840 tccaccattttcccaccaaaaagaattcatgattttctcaatttcgtctccaatagatgatggaattagaaaaatactcatgaagtaggtaggaatagat 21272939  T
Q  200 tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa 299  Q
    || || ||| |||||||||||| || ||||||| ||||||||||||||||||||||||| || || ||||||||||| |||  |||||||||| ||||||    
T  21272940 tgaagcacagatttaatcatcaacttttttcccaccttagataaagagcgtcctccccacgagttaatcttcctccacactcagtccttaatgtatttaa 21273039  T
Q  300 acatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaa 378  Q
    ||||||| |||||| ||||||||||||||||||||| ||  ||||||||| || || | ||||||||||||| ||||||    
T  21273040 acatgtccttcttgttcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa 21273118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 204702 - 204739
Alignment:
Q  113 ccaccaaaaagaattcatcattttctcgatttcatcac 150  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  204702 ccaccaaaaagaattcatcattttctcaatttcatcac 204739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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