View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_38 (Length: 454)
Name: NF2158_low_38
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 1067450 - 1067017
Alignment:
| Q |
20 |
cttgttgacgcccacaaaactgattccgagactcagcaagttaaaaccaatcttgaatgttggtgtctgaaaccgatacgacactgacagtgtgacacat |
119 |
Q |
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| T |
1067450 |
cttgttgacgcccacaaaactgattccgagactcagcaagttgaaaccaatcttgaatgttggtgtctgaaaccga-----cactgacagtctgacacat |
1067356 |
T |
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| Q |
120 |
taggtcacaagcaactatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgttcgtatctatattagtgtttc |
219 |
Q |
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| T |
1067355 |
tgggtcacaagcaactatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgttcgtatctatattagtgtttc |
1067256 |
T |
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| Q |
220 |
atagtgattgagtttagttttgttactgtccattgtctggttatttttcatgaaatttcagatgtatagtggttggaaatttactccattgaagttcttt |
319 |
Q |
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| T |
1067255 |
atagtgattgagtttagttttgttactgtccattatctggttatttttcatgaaatttcagatgtatagtggttggaaatttattccattgaagttcttt |
1067156 |
T |
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| Q |
320 |
attaaacaatgttatgtttcgttttggcga-----------------tgtcgagacatgatggttttaatagcttggtgtcactttgtgatttggagtct |
402 |
Q |
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| T |
1067155 |
attaaacaatgttatgtttcgttttggcgatggtttgtagcaaccattgtcgagacatgatggttttaatagtttggtgtcactttgtgatttggagtct |
1067056 |
T |
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| Q |
403 |
gctatataatgtatctatgttgcttgagaccttgagtat |
441 |
Q |
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| T |
1067055 |
gctatataatgtatctatgttgcttgagaccttgagtat |
1067017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 1067610 - 1067549
Alignment:
| Q |
241 |
gttactgtccattgtctggttatttttcatgaaatttcagatgtatagtggttggaaattta |
302 |
Q |
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| T |
1067610 |
gttactgtccattgtctggctatttttcatgaaatttcaggtgtaccgtgattggaaattta |
1067549 |
T |
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