View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_39 (Length: 441)
Name: NF2158_low_39
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 27 - 425
Target Start/End: Original strand, 55439292 - 55439684
Alignment:
| Q |
27 |
ttctctagcccgacaatgctccactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatccagagacttcgttgcag |
126 |
Q |
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| T |
55439292 |
ttctctagcccggcaatgctctactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatctagagacttcgttgcag |
55439391 |
T |
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| Q |
127 |
atgtaattttcacgccctgcaatttgttcccagaatacaagaaaatgctggtttgcttcttaagaggttgcgcgggcatgcaagtcttattggaccattg |
226 |
Q |
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| T |
55439392 |
atgtaattttcacgccctgcaatttgttcccagaatacaagaaactgctggtttgcttcttaagaggttgcgtgggcatgcaggtcttattggaccattg |
55439491 |
T |
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| Q |
227 |
gatcgacatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagctttaaaatacttggctttacctttacatctca |
326 |
Q |
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| T |
55439492 |
gatcggcatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagcttcaaaatacttgg------ctttacatctca |
55439585 |
T |
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| Q |
327 |
gatttgaaattaacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctg |
425 |
Q |
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| T |
55439586 |
gatttgaaattgacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctg |
55439684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 240 - 425
Target Start/End: Complemental strand, 55472005 - 55471825
Alignment:
| Q |
240 |
ttggtccatttggagaattaaatttggagaagagtgaaa-aaagttccaagaaagctttaaaatacttggctttacctttacatctcagatttgaaatta |
338 |
Q |
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| T |
55472005 |
ttggtccatttggagaattatatacggagaagagtaaaataaaattccaagaaagcttaaaaata------tttaactttacatctcagatttgaaattg |
55471912 |
T |
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| Q |
339 |
acatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctg |
425 |
Q |
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| T |
55471911 |
acatggtatttcattctttatgtgaatttgggggaggtgaagaatagaagaaataattagaagcatatcgtaaaatccattttcctg |
55471825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 55472130 - 55472004
Alignment:
| Q |
93 |
taattgaggacttcatccagagacttcgttgcagatgta--attttcacgccctgcaatttgttcccagaatacaagaaaa---tgctggtttgcttctt |
187 |
Q |
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| T |
55472130 |
taatcgaggacttcatctagagacttcgttgcagattttttattttcattccctgcaatttgttcccagaatacaagaaaccgctgctgctttgcttctt |
55472031 |
T |
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| Q |
188 |
aagaggttgcgcgggcatgcaagtctt |
214 |
Q |
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| T |
55472030 |
aagaggttgcacgggcatgcaagtctt |
55472004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 24 - 425
Target Start/End: Original strand, 43059162 - 43059556
Alignment:
| Q |
24 |
tgcttctctagcccgacaatgctccactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatccagagacttcgttg |
123 |
Q |
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| T |
43059162 |
tgcttctctagcccgacaatactatactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatttagagacttcgttg |
43059261 |
T |
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| Q |
124 |
cagatgtaattttcacgccctgcaatttgttcccagaatacaagaaaatgctggtttgcttcttaagaggttgcgcgggcatgcaagtcttattggacca |
223 |
Q |
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| T |
43059262 |
cagatgtaattttcacgccctgcaatttgttcc-agaatacaagaaactgcttggttgcttcttaagaggttgcgcgggcatgcaggtcttattggacca |
43059360 |
T |
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| Q |
224 |
ttggatcgacatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagctttaaaatacttggctttacctttacatc |
323 |
Q |
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| T |
43059361 |
ttggatcggcatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagcttcaaaatacttgg------ctttacatc |
43059454 |
T |
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| Q |
324 |
tcagatttgaaattaacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcc |
423 |
Q |
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| T |
43059455 |
tcagatttgaaattgacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcc |
43059554 |
T |
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