View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_4 (Length: 902)
Name: NF2158_low_4
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 609 - 860
Target Start/End: Complemental strand, 1119547 - 1119296
Alignment:
| Q |
609 |
atgtaccagaaggaataacttgatagaatatgtgctacccttgagtcaaagaagacataaatttcaataatttagtatatgaaacatattatgaaaaacc |
708 |
Q |
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| T |
1119547 |
atgtaccagaaggaataacttgatagaatatgtgctacccttgagtcaaagaagacataaatttcaataatttagtatatgaaacatattatgaaaaacc |
1119448 |
T |
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| Q |
709 |
tccaaagtgcatacctgaatgacagcaaaaatagcataaattggagactctggtaaataagaatcaaagtgacccaaagtacaccaaaatgtacaagcag |
808 |
Q |
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| T |
1119447 |
tccaaagtgcatacctgaatgacaacaaaaatagcataaattggagactctggtaaataagaatcaaagtgatccaaagtacaccaaaatgtacaagcag |
1119348 |
T |
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| Q |
809 |
aagaatcgaattgatcaaaagtacaccaaaaatataccaaaatctacaagca |
860 |
Q |
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| T |
1119347 |
aaaaatcaaattgatcaaaagtacaccaaaaatataccaaaatctacaagca |
1119296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 216 - 517
Target Start/End: Complemental strand, 1119832 - 1119543
Alignment:
| Q |
216 |
gatgcatgtttaaatcaaacttgattcgtcaatttaccnnnnnnnnngtgttaattaatgaacacgggttttgtttttgtgctgacacggttcagattat |
315 |
Q |
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| T |
1119832 |
gatgcatgtttaaatcaaacttgattcatcaatttaccaaaaaaaa-gttttaactaatgaacacgggttttgtttttgtgctgacacagttcagactat |
1119734 |
T |
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| Q |
316 |
acaatctgaacagtattttaccagttcgtattctataatccaaattatgtcaaattatgaactgcaattgatttttgaaacccaacaaaaatatatttca |
415 |
Q |
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| T |
1119733 |
acaatctgaacagtattttaccagttcatattctataatccaaattatg----------aactgcaattgatttttgaaacccaacaaaaatatatttca |
1119644 |
T |
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| Q |
416 |
ttccagaggaagtagtacttaatcactcacacttaaaaatccaacaaaaaccaactacttttaaacattagaaccttgtcttaaaattcaacacataatg |
515 |
Q |
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| T |
1119643 |
ttccagaggaagtagtacttaatcactcacactt-aaaatccaacaaaaactaactacttttaaacattagaaccttgtcttaaaattcaacacataatg |
1119545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 1120030 - 1119906
Alignment:
| Q |
18 |
gatatatcactggaggcagcggggtggtaggggtgaccatgatactcggtagttttatgactctgttttaaaatttggataatttatgcttggacctttt |
117 |
Q |
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| T |
1120030 |
gatatatcactggaggcagcggggtggtaggggtgaccatgatactcggtagttttatgactctgttgtaaaatttggataatttatgcttggacctttt |
1119931 |
T |
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| Q |
118 |
gttgtaacctttggatattggtgat |
142 |
Q |
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| T |
1119930 |
gttgtaacctttggatattggtgat |
1119906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 791 - 887
Target Start/End: Complemental strand, 31310110 - 31310013
Alignment:
| Q |
791 |
accaaaatgtacaagcagaagaatcgaattgatcaaaagtacaccaaaaatatac---caaaatctacaagcaacagcaatgtacaccaaactctacaag |
887 |
Q |
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| T |
31310110 |
accaaaatctacaagcagaagaata-aattaatcaaaagtacaccaaaa-tctacaagcagaatcaacaagcatcaacaatgtacaccaaactctacaag |
31310013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 20284909 - 20284850
Alignment:
| Q |
83 |
ttttaaaatttggataatttatgcttggaccttttgttgtaacctttggatattggtgat |
142 |
Q |
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| T |
20284909 |
ttttaacatttgtataatttatgttagaatcttttgttgtaacctttggatattggtgat |
20284850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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