View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_40 (Length: 433)
Name: NF2158_low_40
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 79 - 416
Target Start/End: Original strand, 52050503 - 52050840
Alignment:
| Q |
79 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaacctcaatctttctctttctatgaaaa |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52050503 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaaccgtaatctttctctttctatgaaaa |
52050602 |
T |
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| Q |
179 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgtatatttatatgacacaacagcttctttatatatctccatatatgtaaacttc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52050603 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgtatatttgtatgacacaacagcttctttatatatctccatatatgcaaacttc |
52050702 |
T |
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| Q |
279 |
atcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgcataaatttatagaaagtgtgttattgcacatttaatga |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050703 |
atcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgcataaatttatagaaagtgtgttattgcacatttaatga |
52050802 |
T |
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| Q |
379 |
attttaagacattgcatgtgaaagcaaacattaaacat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52050803 |
attttaagacattgcatgtgaaagcaaacattaaacat |
52050840 |
T |
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