View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_46 (Length: 401)
Name: NF2158_low_46
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 2144174 - 2143801
Alignment:
| Q |
19 |
gttagttcaattcatgcatgcatgcatatgttttattctccttaataagagatcacactcttgcgcatgcagtgccagcctctttggtcgaaacnnnnnn |
118 |
Q |
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| T |
2144174 |
gttagttcaattcatgcatgcatgcatatgttttattctccttaataagagatcacactcttgcgcatgcagtcccagcctctttggtcgaaacaaaaaa |
2144075 |
T |
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| Q |
119 |
ngaatatttctatacacaacttgttactgctactatttatattttctcttatatgagcagcagggttaatattattgttgggatgagaagagagtggggg |
218 |
Q |
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| T |
2144074 |
agaatatttctatacacaacttgttactgctactatttatattttctcttatatgagcagcagggttaatattattgttgggatgagaagagagtggggg |
2143975 |
T |
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| Q |
219 |
accttatatataacgaggacttgttagcatcagcgtgccagaatgtataaatttaaaagtacctgtagctgataattaacaacgttggtgagtagttgac |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
2143974 |
accttataaataacgaggacttgttagcatcagcgtgccagaatgtataaatttaaaagtacctgtagctaataattaacaaagttggtgagtagttgac |
2143875 |
T |
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| Q |
319 |
tcatttgtaagtttgtagattcaacttccgttgtttggtgatgacttctttaataaatgatatgtaagtattat |
392 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
2143874 |
tcatttttaagtttgtagattcaactttcgttgtttggtgatgatttctttaatagatgatatgtaagtattat |
2143801 |
T |
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