View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_47 (Length: 398)
Name: NF2158_low_47
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 27349405 - 27349016
Alignment:
| Q |
1 |
ctgcaacaggttgtcgtgccacagcttccagtaggtttcgttcacctgcttctacttttgcataaccgttaatatttgcaaaactacgtttggatcctct |
100 |
Q |
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| T |
27349405 |
ctgcaacgggttgtcgtgccacagcttctagtaggttttgttcacctgcttctacttttgcataacctttaatatttgcaaaactacgtttggatcctct |
27349306 |
T |
|
| Q |
101 |
attgcatccgagcttttgagctctataaggataatcgacatcccttgatattccatttttcgcgatatactcaaaagctatagatgccttacctccatca |
200 |
Q |
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| T |
27349305 |
attgcatccgagcttttgagctctataaggataatcaacatcccttgttattccatttttcacgatatactcaaaagctatagatgccttacctccatca |
27349206 |
T |
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| Q |
201 |
catccatagttcccttggtcacaatcgatcaactcttgtgcagacaatgcaaccaatgggcggttctgtttgattttcataattccttctaccgttgcag |
300 |
Q |
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| T |
27349205 |
catccattgttcccttggtcacaatcgatcaactcttgtgcagacaatgcaaccaatgggcggttctgtttgattttcataattccttctaccgttgcag |
27349106 |
T |
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| Q |
301 |
ttaccgcaaatgcccaacaacttcctataattaaaacgaattaatcaatcagacaatatattaattaaatagtacacttaaaagtattat |
390 |
Q |
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| T |
27349105 |
ttaccgcaaatgcccaacaacttcctataattaaaacggattaatcaatcggacaatatattaattaaatagtacacttaaaagtattat |
27349016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 28417900 - 28418009
Alignment:
| Q |
269 |
tttgattttcataattccttctaccgttgcagttaccgcaaatgcccaacaacttcctataattaaaacgaattaatcaatcagacaatatattaattaa |
368 |
Q |
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| T |
28417900 |
tttgatttgtataattccttctacagctgctgctgccgcgaatgcccaacaacttgctatgattaaaaaagtataatcaaccacacaatatgttaattaa |
28417999 |
T |
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| Q |
369 |
atagtacact |
378 |
Q |
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| T |
28418000 |
ttagtacact |
28418009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 28283844 - 28283903
Alignment:
| Q |
269 |
tttgattttcataattccttctaccgttgcagttaccgcaaatgcccaacaacttcctat |
328 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||||||| |||||| |||||| |
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| T |
28283844 |
tttgattttcataattccttctaccgctgctgttgtcgcaaatgcataacaacatcctat |
28283903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 28004397 - 28004299
Alignment:
| Q |
269 |
tttgattttcataattccttctaccgttgcagttaccgcaaatgcccaacaacttcctataattaaaacgaattaatcaatcagacaatatattaatta |
367 |
Q |
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|||||||| || |||||||||||||| ||| | ||||||||||||||||||| || ||||| ||| | |||| ||||||| ||| |||||||||| |
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| T |
28004397 |
tttgatttgcacaattccttctaccgctgccaatgtcgcaaatgcccaacaacttgctgtaatttaaatggattagtcaatcaagcaaaatattaatta |
28004299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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