View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2158_low_48 (Length: 397)
Name: NF2158_low_48
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2158_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 3974714 - 3975059
Alignment:
| Q |
17 |
atcttctaatgaaattattagaagtacatcttaattannnnnnngaataactcaaatgttaatttagaatcagatccacagaccttgtgtgtctgtcatt |
116 |
Q |
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| T |
3974714 |
atcttctaatgaaattattagaagtacatcttaattattttcttgaataactcaaatgttgatttagaatcagatccacagaccttgtgtgtctgtcatt |
3974813 |
T |
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| Q |
117 |
ctttcaaagctaaatctgaacgatagcaagtgatttagaatttagaataaaggttagaaacaaatccttaaaagccaaaaagaaattccaacataagatt |
216 |
Q |
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| T |
3974814 |
ctttcaaagctaaatctgaacgatagcaagtgattttgaatttagaataaaggttagaaacaaatccttaaaagctaaaaagaaattccaacataagatt |
3974913 |
T |
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| Q |
217 |
ttgttaaaaccaccacaaggaacataaaatttattaaaagaagaaaaataatcggaacatta----nnnnnnnnnaaggaaatcggaacannnnnnnaga |
312 |
Q |
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| T |
3974914 |
ttgttaaaaccaccacaaggaacataaaatttattaaaagaagaaaaataatcggaacattatttttatttttttaaggaaatc-gaacatttttttaga |
3975012 |
T |
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| Q |
313 |
agagcataacataacatttaagaatctgtccttagtcctagattctt |
359 |
Q |
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| T |
3975013 |
agagcataacataacatttaagaatctgtccttagtcctagattctt |
3975059 |
T |
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