View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2158_low_5 (Length: 882)

Name: NF2158_low_5
Description: NF2158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2158_low_5
NF2158_low_5
[»] chr2 (10 HSPs)
chr2 (372-809)||(43486401-43486836)
chr2 (1-91)||(43486997-43487087)
chr2 (161-244)||(7718736-7718819)
chr2 (221-270)||(43486938-43486987)
chr2 (93-247)||(10003604-10003756)
chr2 (157-247)||(11929073-11929163)
chr2 (692-771)||(43475809-43475885)
chr2 (99-247)||(9044108-9044253)
chr2 (93-136)||(25643030-25643073)
chr2 (417-450)||(11548073-11548106)
[»] chr4 (5 HSPs)
chr4 (157-243)||(24914495-24914581)
chr4 (179-243)||(25361721-25361785)
chr4 (99-193)||(17621942-17622034)
chr4 (194-247)||(21014729-21014782)
chr4 (93-132)||(24914604-24914643)
[»] chr7 (3 HSPs)
chr7 (99-235)||(44680152-44680286)
chr7 (146-229)||(687359-687442)
chr7 (415-452)||(43255603-43255640)
[»] chr8 (2 HSPs)
chr8 (180-247)||(10873382-10873449)
chr8 (188-247)||(11623692-11623751)
[»] scaffold0027 (1 HSPs)
scaffold0027 (97-236)||(25770-25907)
[»] chr5 (1 HSPs)
chr5 (96-132)||(3495335-3495371)
[»] chr1 (2 HSPs)
chr1 (179-247)||(36353056-36353124)
chr1 (179-234)||(39305467-39305522)
[»] chr3 (4 HSPs)
chr3 (93-132)||(44112032-44112071)
chr3 (97-132)||(48050689-48050724)
chr3 (99-188)||(41767177-41767264)
chr3 (96-146)||(48951056-48951106)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 372 - 809
Target Start/End: Complemental strand, 43486836 - 43486401
Alignment:
Q  372 tttataaaacggtcgtcctcttcaccatatctcgcatacgactaattgtcataaaataattgtacaaatatgattactcttaaactatcatatctatcat 471  Q
    ||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43486836 tttataagacggtcgtcctcttcaccatatctcgtatacgattagttgtcataaaataattgtacaaatatgattactcttaaactatcatatctatcat 43486737  T
Q  472 aaagtctctttctctcttcgtctagaggtgtatacactcacaattagagtgtaaaaacaaaat--------cattagagaaggtaaatgcattgctggct 563  Q
    | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||         |||||||||||||||||||||||||||||    
T  43486736 agagtctctttctctcttggtctagaggtgtatacactgacaattagagtgtaaaaaaaaaaaaaaaaaaccattagagaaggtaaatgcattgctggct 43486637  T
Q  564 gcacaatatgacaattatatggcttggtggacgttcaatttcaaacatttcaaccaagtaaagcactccttttgtcgttcttcaaaagcataggcttccc 663  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43486636 gcacaatatgaaaattatatggcttggtggatgttcaatttcaaacatttcaaccaagtaaagcactccttttgtcgtttttcaaaagcataggcttccc 43486537  T
Q  664 ccaaaatataacaaaatattataaagacataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcat 763  Q
    |||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43486536 ccaaaatat----------tataaagacataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcat 43486447  T
Q  764 ttatcattttccttcttttccccctcactatatataacctcaacac 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43486446 ttatcattttccttcttttccccctcactatatataacctcaacac 43486401  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43487087 - 43486997
Alignment:
Q  1 gatagttaagagagttcgatataaaatagtattattatataataaaaacatcggacttcatagaaaataaataatagaacatcagaattct 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487087 gatagttaagagagttcgatataaaatagtattattatataataaaaacatcggacttcatagaaaataaataatagaacatcagaattct 43486997  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 7718819 - 7718736
Alignment:
Q  161 gttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatc 244  Q
    ||||| ||| |||||| ||||||||||||||| | ||||||||||| | |||||| |||||||||||||||||||||| |||||    
T  7718819 gttaaaagaattcgatatgcaattgaaacattcatataacaatttgcagctttgacaaactcaagaatttcaaatgttcacatc 7718736  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 43486987 - 43486938
Alignment:
Q  221 tcaagaatttcaaatgttgacatcaacgcatccttaaaatttatactaga 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43486987 tcaagaatttcaaatgttgacatcaacgcatccttaaaatttatattaga 43486938  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 10003756 - 10003604
Alignment:
Q  93 aagtaatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatt 192  Q
    ||||| ||||||||| | |||||||||||||||||||||| |  | |||||| |   | |||   |||||||||||| ||||||  ||| ||||||| ||    
T  10003756 aagtagtttttcaatcattttaacttcgaaaaacttctttctataaatgcaacaa--tcatcggtatagttaagagaattcgataagcacttgaaacgtt 10003659  T
Q  193 tagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    | |||||||||  ||   ||||| |||||||||||||||||||||||||||||||    
T  10003658 tggataacaatcggtggatttgacaaactcaagaatttcaaatgttgacatcaac 10003604  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 11929163 - 11929073
Alignment:
Q  157 catagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    ||||||||||||| ||||||  | ||||||||||||| ||||||||| |  |||||||| ||| |||||||||| |||||||||| |||||    
T  11929163 catagttaagagaattcgataagaaattgaaacatttggataacaatctacaactttgacaaattcaagaattttaaatgttgacgtcaac 11929073  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 771
Target Start/End: Complemental strand, 43475885 - 43475809
Alignment:
Q  692 ataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcatttatcatt 771  Q
    ||||||||| |||||| ||| ||||||||||   |||||||| ||||||||||||||| ||||||||||||||| |||||    
T  43475885 ataaagtaacacaaaacatgcatgcacccac---gggttattttatttccatatggtgtattcaatattcatttctcatt 43475809  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 247
Target Start/End: Complemental strand, 9044253 - 9044108
Alignment:
Q  99 tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagata 198  Q
    |||||||||||||| || ||| |||| ||| |||||||| |||||||| |   | |||||||||||||||| | | ||   ||||||||| |||| ||||    
T  9044253 tttttcaataagtt-aatttcaaaaatcttttttatgcagatgcaatagac--accaacatagttaagagaatccaataaacaattgaaatatttggata 9044157  T
Q  199 acaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    ||||||| | | ||||| |||||||||||||||| |||  |||||||||    
T  9044156 acaatttatgattttgacaaactcaagaatttcatatgccgacatcaac 9044108  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 25643030 - 25643073
Alignment:
Q  93 aagtaatttttcaataagtttaacttcgaaaaacttctttatgc 136  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||    
T  25643030 aagtagtttttcaataattttaacttctaaaaacttctttatgc 25643073  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 11548073 - 11548106
Alignment:
Q  417 ttgtcataaaataattgtacaaatatgattactc 450  Q
    |||||||||||||||||||||||||| |||||||    
T  11548073 ttgtcataaaataattgtacaaatatcattactc 11548106  T

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Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 24914581 - 24914495
Alignment:
Q  157 catagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacat 243  Q
    ||||||||||||| ||| ||  ||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  24914581 catagttaagagaattcaataagcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgttgacat 24914495  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 25361721 - 25361785
Alignment:
Q  179 gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacat 243  Q
    ||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  25361721 gcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgctgacat 25361785  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 17621942 - 17622034
Alignment:
Q  99 tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacattt 193  Q
    ||||||||||| |||||||||||||||||||||| | ||||| ||  | | | ||| |||||||||||||| || |||  |||||||||||||||    
T  17621942 tttttcaataattttaacttcgaaaaacttctttctacacataca--acaatcatcgacatagttaagagaatttgataagcaattgaaacattt 17622034  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 21014782 - 21014729
Alignment:
Q  194 agataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    ||||||||| ||| | |||||| |||||||||||||||||||| ||||||||||    
T  21014782 agataacaaattgcagctttgacaaactcaagaatttcaaatgctgacatcaac 21014729  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 24914643 - 24914604
Alignment:
Q  93 aagtaatttttcaataagtttaacttcgaaaaacttcttt 132  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  24914643 aagtaatttttgaataactttaacttcgaaaaacttcttt 24914604  T

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Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 44680286 - 44680152
Alignment:
Q  99 tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagata 198  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||| ||  ||||||||||| |||||| | ||||||  |||||  ||| |||| ||||    
T  44680286 tttttgaataattttaacttcgaaaaacttctttatgcaaatgcaacat--ttatcaacatatttaagaaaattcgataagcaatcaaaatatttggata 44680189  T
Q  199 acaatttgtaactttgataaactcaagaatttcaaat 235  Q
    ||||| | |  |||||| |||||||||||| ||||||    
T  44680188 acaatatatgcctttgacaaactcaagaatgtcaaat 44680152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 687359 - 687442
Alignment:
Q  146 atagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatt 229  Q
    ||||| ||| |||||||||||||| |||||| || |||||||||||||  |||| ||| |||| |||||| |||||||||||||    
T  687359 atagtcatcgacatagttaagagaattcgatatggaattgaaacatttgcataaaaatctgtagctttgacaaactcaagaatt 687442  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 43255603 - 43255640
Alignment:
Q  415 aattgtcataaaataattgtacaaatatgattactctt 452  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  43255603 aattgtcacaaaataattgtacaaatatcattactctt 43255640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 10873382 - 10873449
Alignment:
Q  180 caattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    |||||||||||||| ||||||||| ||  ||||||| |||||||| | ||| ||||||||||||||||    
T  10873382 caattgaaacatttggataacaatatgcgactttgacaaactcaaaattttaaaatgttgacatcaac 10873449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 11623692 - 11623751
Alignment:
Q  188 acatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    |||||| ||||||||| || | |||||| ||||| |||||||||||||||||||||||||    
T  11623692 acatttggataacaatatgcacctttgacaaactgaagaatttcaaatgttgacatcaac 11623751  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 25770 - 25907
Alignment:
Q  97 aatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttaga 196  Q
    ||||||||||||| |||||||||||||||||||||| | || ||||   ||||| |||  |  | ||||| || ||||||  |||| ||||||||| |||    
T  25770 aatttttcaataattttaacttcgaaaaacttctttctacagatgc--catagtcatcggcgcaattaagtgaattcgataagcaactgaaacattcaga 25867  T
Q  197 taacaatttgtaactttgataaactcaagaatttcaaatg 236  Q
    ||||||| ||   || ||| || |||||||||||||||||    
T  25868 taacaatgtgcggctatgagaagctcaagaatttcaaatg 25907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 3495335 - 3495371
Alignment:
Q  96 taatttttcaataagtttaacttcgaaaaacttcttt 132  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3495335 taatttttcaataattttaacttcgaaaaacttcttt 3495371  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 36353124 - 36353056
Alignment:
Q  179 gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac 247  Q
    |||||||||||||||| ||| |||||||    ||||| |||||||||||||||||||| | ||||||||    
T  36353124 gcaattgaaacatttaaatatcaatttgcggttttgacaaactcaagaatttcaaatgctaacatcaac 36353056  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 39305467 - 39305522
Alignment:
Q  179 gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaa 234  Q
    ||||||||||||||| ||||||||| ||   ||||||||||| |||||||||||||    
T  39305467 gcaattgaaacatttggataacaatatgcggctttgataaacacaagaatttcaaa 39305522  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 44112071 - 44112032
Alignment:
Q  93 aagtaatttttcaataagtttaacttcgaaaaacttcttt 132  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  44112071 aagtagtttttcaataattttaacttcgaaaaacttcttt 44112032  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 48050724 - 48050689
Alignment:
Q  97 aatttttcaataagtttaacttcgaaaaacttcttt 132  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48050724 aatttttcaataattttaacttcgaaaaacttcttt 48050689  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 41767264 - 41767177
Alignment:
Q  99 tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaa 188  Q
    ||||||||||  |||||||||||||||||||||| | ||||||||  | | | ||| ||||| |||||||| ||||||  ||||||||||    
T  41767264 tttttcaatacttttaacttcgaaaaacttctttctacacatgca--acaatcatcgacataattaagagaattcgataagcaattgaaa 41767177  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 48951056 - 48951106
Alignment:
Q  96 taatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaata 146  Q
    |||||||||||||| ||||| || ||||||||||||| |||| ||||||||    
T  48951056 taatttttcaataattttaattttgaaaaacttctttctgcagatgcaata 48951106  T

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